Reactome: A Curated Pathway Database

Attributes of class 'StableIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A StableIdentifier   TEXT
identifierVersion 1 TEXT N/A StableIdentifier   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
oldIdentifier 1 TEXT N/A StableIdentifier   TEXT
oldIdentifierVersion 1 TEXT N/A StableIdentifier   TEXT
released 1 OTHER N/A StableIdentifier   ENUM('TRUE','FALSE')
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'StableIdentifier' instances

Class name Attribute name Cardinality
Polymer stableIdentifier 1
DatabaseIdentifier stableIdentifier 1
Requirement stableIdentifier 1
FragmentModification stableIdentifier 1
Publication stableIdentifier 1
Disease stableIdentifier 1
PathwayCoordinates stableIdentifier 1
CrosslinkedResidue stableIdentifier 1
Species stableIdentifier 1
DeletedControlledVocabulary stableIdentifier 1
ReactionVertex stableIdentifier 1
EvidenceType stableIdentifier 1
Event stableIdentifier 1
TranslationalModification stableIdentifier 1
Complex stableIdentifier 1
IntraChainCrosslinkedResidue stableIdentifier 1
ReferenceGeneProduct stableIdentifier 1
ReferenceMolecule stableIdentifier 1
GO_CellularComponent stableIdentifier 1
PathwayDiagram stableIdentifier 1
Affiliation stableIdentifier 1
NegativeRegulation stableIdentifier 1
CellType stableIdentifier 1
LiteratureReference stableIdentifier 1
FunctionalStatusType stableIdentifier 1
ReferenceSequence stableIdentifier 1
FragmentDeletionModification stableIdentifier 1
ReferenceDNASequence stableIdentifier 1
Reaction stableIdentifier 1
EntityFunctionalStatus stableIdentifier 1
SequenceOntology stableIdentifier 1
FragmentInsertionModification stableIdentifier 1
OtherEntity stableIdentifier 1
PositiveGeneExpressionRegulation stableIdentifier 1
_Deleted stableIdentifier 1
PathwayDiagramItem stableIdentifier 1
ConcurrentEventSet stableIdentifier 1
EntityCompartment stableIdentifier 1
Pathway stableIdentifier 1
BlackBoxEvent stableIdentifier 1
ExternalOntology stableIdentifier 1
Book stableIdentifier 1
PhysicalEntity stableIdentifier 1
Figure stableIdentifier 1
Compartment stableIdentifier 1
EntityVertex stableIdentifier 1
Vertex stableIdentifier 1
InstanceEdit stableIdentifier 1
Summation stableIdentifier 1
GroupModifiedResidue stableIdentifier 1
EntitySet stableIdentifier 1
ReferenceIsoform stableIdentifier 1
GO_BiologicalProcess stableIdentifier 1
ReferenceDatabase stableIdentifier 1
_Release stableIdentifier 1
InterChainCrosslinkedResidue stableIdentifier 1
FailedReaction stableIdentifier 1
FunctionalStatus stableIdentifier 1
Person stableIdentifier 1
CandidateSet stableIdentifier 1
PositiveRegulation stableIdentifier 1
URL stableIdentifier 1
ReferenceGroup stableIdentifier 1
GenomeEncodedEntity stableIdentifier 1
FragmentReplacedModification stableIdentifier 1
GO_MolecularFunction stableIdentifier 1
CatalystActivity stableIdentifier 1
DefinedSet stableIdentifier 1
OpenSet stableIdentifier 1
ReferenceRNASequence stableIdentifier 1
VertexSearchableTerm stableIdentifier 1
DatabaseObject stableIdentifier 1
FrontPage stableIdentifier 1
Regulation stableIdentifier 1
PsiMod stableIdentifier 1
PathwayVertex stableIdentifier 1
AbstractModifiedResidue stableIdentifier 1
ReplacedResidue stableIdentifier 1
Edge stableIdentifier 1
GeneticallyModifiedResidue stableIdentifier 1
SimpleEntity stableIdentifier 1
ReactionlikeEvent stableIdentifier 1
StableIdentifier stableIdentifier 1
Taxon stableIdentifier 1
Polymerisation stableIdentifier 1
ControlledVocabulary stableIdentifier 1
NegativeGeneExpressionRegulation stableIdentifier 1
Depolymerisation stableIdentifier 1
ReactionCoordinates stableIdentifier 1
ReferenceEntity stableIdentifier 1
_InstanceBeforeChange stableIdentifier 1
ModifiedResidue stableIdentifier 1
_AttributeValueBeforeChange stableIdentifier 1
EntityWithAccessionedSequence stableIdentifier 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.