Reactome: A Curated Pathway Database

Attributes of class 'StableIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A StableIdentifier   TEXT
identifierVersion 1 TEXT N/A StableIdentifier   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
oldIdentifier 1 TEXT N/A StableIdentifier   TEXT
oldIdentifierVersion 1 TEXT N/A StableIdentifier   TEXT
released 1 OTHER N/A StableIdentifier   ENUM('TRUE','FALSE')
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'StableIdentifier' instances

Class name Attribute name Cardinality
ReferenceIsoform stableIdentifier 1
FragmentInsertionModification stableIdentifier 1
SimpleEntity stableIdentifier 1
NegativeRegulation stableIdentifier 1
PathwayDiagram stableIdentifier 1
Affiliation stableIdentifier 1
ReferenceMolecule stableIdentifier 1
EvidenceType stableIdentifier 1
_AttributeValueBeforeChange stableIdentifier 1
ReactionCoordinates stableIdentifier 1
Depolymerisation stableIdentifier 1
StableIdentifier stableIdentifier 1
FragmentReplacedModification stableIdentifier 1
ControlledVocabulary stableIdentifier 1
ReferenceSequence stableIdentifier 1
EntitySet stableIdentifier 1
GenomeEncodedEntity stableIdentifier 1
_InstanceBeforeChange stableIdentifier 1
OpenSet stableIdentifier 1
NegativeGeneExpressionRegulation stableIdentifier 1
PositiveGeneExpressionRegulation stableIdentifier 1
ReactionVertex stableIdentifier 1
DatabaseObject stableIdentifier 1
PositiveRegulation stableIdentifier 1
ExternalOntology stableIdentifier 1
GO_BiologicalProcess stableIdentifier 1
FrontPage stableIdentifier 1
EntityFunctionalStatus stableIdentifier 1
ConcurrentEventSet stableIdentifier 1
CandidateSet stableIdentifier 1
Reaction stableIdentifier 1
PathwayVertex stableIdentifier 1
FunctionalStatus stableIdentifier 1
EntityVertex stableIdentifier 1
ModifiedResidue stableIdentifier 1
AbstractModifiedResidue stableIdentifier 1
CellType stableIdentifier 1
Compartment stableIdentifier 1
PhysicalEntity stableIdentifier 1
FailedReaction stableIdentifier 1
ReferenceDNASequence stableIdentifier 1
TranslationalModification stableIdentifier 1
SequenceOntology stableIdentifier 1
_Release stableIdentifier 1
ReferenceDatabase stableIdentifier 1
Edge stableIdentifier 1
ReactionlikeEvent stableIdentifier 1
Book stableIdentifier 1
CatalystActivity stableIdentifier 1
Disease stableIdentifier 1
GO_CellularComponent stableIdentifier 1
PsiMod stableIdentifier 1
Pathway stableIdentifier 1
ReplacedResidue stableIdentifier 1
_Deleted stableIdentifier 1
ReferenceEntity stableIdentifier 1
ReferenceGeneProduct stableIdentifier 1
Summation stableIdentifier 1
OtherEntity stableIdentifier 1
Publication stableIdentifier 1
Figure stableIdentifier 1
GeneticallyModifiedResidue stableIdentifier 1
Polymerisation stableIdentifier 1
EntityWithAccessionedSequence stableIdentifier 1
Taxon stableIdentifier 1
DefinedSet stableIdentifier 1
IntraChainCrosslinkedResidue stableIdentifier 1
LiteratureReference stableIdentifier 1
PathwayDiagramItem stableIdentifier 1
Vertex stableIdentifier 1
Species stableIdentifier 1
FragmentDeletionModification stableIdentifier 1
GroupModifiedResidue stableIdentifier 1
ReferenceRNASequence stableIdentifier 1
Person stableIdentifier 1
Event stableIdentifier 1
PathwayCoordinates stableIdentifier 1
FunctionalStatusType stableIdentifier 1
Complex stableIdentifier 1
VertexSearchableTerm stableIdentifier 1
Regulation stableIdentifier 1
CrosslinkedResidue stableIdentifier 1
DatabaseIdentifier stableIdentifier 1
ReferenceGroup stableIdentifier 1
EntityCompartment stableIdentifier 1
Requirement stableIdentifier 1
URL stableIdentifier 1
InstanceEdit stableIdentifier 1
FragmentModification stableIdentifier 1
BlackBoxEvent stableIdentifier 1
DeletedControlledVocabulary stableIdentifier 1
InterChainCrosslinkedResidue stableIdentifier 1
Polymer stableIdentifier 1
GO_MolecularFunction stableIdentifier 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.