Reactome: A Curated Pathway Database

Attributes of class 'StableIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A StableIdentifier   TEXT
identifierVersion 1 TEXT N/A StableIdentifier   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
oldIdentifier 1 TEXT N/A StableIdentifier   TEXT
oldIdentifierVersion 1 TEXT N/A StableIdentifier   TEXT
released 1 OTHER N/A StableIdentifier   ENUM('TRUE','FALSE')
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'StableIdentifier' instances

Class name Attribute name Cardinality
_AttributeValueBeforeChange stableIdentifier 1
GenomeEncodedEntity stableIdentifier 1
NegativeGeneExpressionRegulation stableIdentifier 1
RNADrug stableIdentifier 1
Publication stableIdentifier 1
ReferenceSequence stableIdentifier 1
PathwayCoordinates stableIdentifier 1
EntityFunctionalStatus stableIdentifier 1
Vertex stableIdentifier 1
InterChainCrosslinkedResidue stableIdentifier 1
GO_BiologicalProcess stableIdentifier 1
EntitySet stableIdentifier 1
Species stableIdentifier 1
PathwayVertex stableIdentifier 1
ExternalOntology stableIdentifier 1
Book stableIdentifier 1
SimpleEntity stableIdentifier 1
FunctionalStatusType stableIdentifier 1
ProteinDrug stableIdentifier 1
IntraChainCrosslinkedResidue stableIdentifier 1
Polymer stableIdentifier 1
ReferenceDNASequence stableIdentifier 1
PsiMod stableIdentifier 1
ReferenceGeneProduct stableIdentifier 1
FragmentReplacedModification stableIdentifier 1
CandidateSet stableIdentifier 1
Affiliation stableIdentifier 1
Disease stableIdentifier 1
PhysicalEntity stableIdentifier 1
URL stableIdentifier 1
EntityVertex stableIdentifier 1
ChemicalDrug stableIdentifier 1
Event stableIdentifier 1
Regulation stableIdentifier 1
Complex stableIdentifier 1
FunctionalStatus stableIdentifier 1
SequenceOntology stableIdentifier 1
ConcurrentEventSet stableIdentifier 1
EvidenceType stableIdentifier 1
Reaction stableIdentifier 1
InstanceEdit stableIdentifier 1
EntityWithAccessionedSequence stableIdentifier 1
ReactionlikeEvent stableIdentifier 1
GeneticallyModifiedResidue stableIdentifier 1
ReplacedResidue stableIdentifier 1
ReferenceGroup stableIdentifier 1
Figure stableIdentifier 1
NegativeRegulation stableIdentifier 1
EntityCompartment stableIdentifier 1
ReferenceMolecule stableIdentifier 1
OpenSet stableIdentifier 1
DeletedControlledVocabulary stableIdentifier 1
TranslationalModification stableIdentifier 1
Pathway stableIdentifier 1
ReferenceTherapeutic stableIdentifier 1
DatabaseObject stableIdentifier 1
ReferenceRNASequence stableIdentifier 1
DefinedSet stableIdentifier 1
Requirement stableIdentifier 1
Compartment stableIdentifier 1
CrosslinkedResidue stableIdentifier 1
ReferenceDatabase stableIdentifier 1
ReferenceEntity stableIdentifier 1
FragmentModification stableIdentifier 1
DatabaseIdentifier stableIdentifier 1
GroupModifiedResidue stableIdentifier 1
Person stableIdentifier 1
VertexSearchableTerm stableIdentifier 1
GO_CellularComponent stableIdentifier 1
StableIdentifier stableIdentifier 1
CatalystActivity stableIdentifier 1
ReferenceIsoform stableIdentifier 1
OtherEntity stableIdentifier 1
PathwayDiagramItem stableIdentifier 1
ReactionCoordinates stableIdentifier 1
PathwayDiagram stableIdentifier 1
Depolymerisation stableIdentifier 1
FrontPage stableIdentifier 1
GO_MolecularFunction stableIdentifier 1
FragmentDeletionModification stableIdentifier 1
_Deleted stableIdentifier 1
_InstanceBeforeChange stableIdentifier 1
AbstractModifiedResidue stableIdentifier 1
PositiveRegulation stableIdentifier 1
BlackBoxEvent stableIdentifier 1
Drug stableIdentifier 1
Summation stableIdentifier 1
CellType stableIdentifier 1
ReactionVertex stableIdentifier 1
FragmentInsertionModification stableIdentifier 1
ControlledVocabulary stableIdentifier 1
ModifiedResidue stableIdentifier 1
Edge stableIdentifier 1
Polymerisation stableIdentifier 1
LiteratureReference stableIdentifier 1
FailedReaction stableIdentifier 1
Taxon stableIdentifier 1
PositiveGeneExpressionRegulation stableIdentifier 1
_Release stableIdentifier 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.