Reactome: A Curated Pathway Database

Attributes of class 'StableIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A StableIdentifier   TEXT
identifierVersion 1 TEXT N/A StableIdentifier   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
oldIdentifier 1 TEXT N/A StableIdentifier   TEXT
oldIdentifierVersion 1 TEXT N/A StableIdentifier   TEXT
released 1 OTHER N/A StableIdentifier   ENUM('TRUE','FALSE')
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'StableIdentifier' instances

Class name Attribute name Cardinality
PsiMod stableIdentifier 1
Book stableIdentifier 1
SequenceOntology stableIdentifier 1
VertexSearchableTerm stableIdentifier 1
EntityCompartment stableIdentifier 1
Species stableIdentifier 1
_Deleted stableIdentifier 1
PositiveGeneExpressionRegulation stableIdentifier 1
ReplacedResidue stableIdentifier 1
EntityFunctionalStatus stableIdentifier 1
FragmentModification stableIdentifier 1
Vertex stableIdentifier 1
FunctionalStatus stableIdentifier 1
FragmentReplacedModification stableIdentifier 1
Requirement stableIdentifier 1
Edge stableIdentifier 1
InterChainCrosslinkedResidue stableIdentifier 1
ReferenceEntity stableIdentifier 1
Taxon stableIdentifier 1
OpenSet stableIdentifier 1
ReactionVertex stableIdentifier 1
URL stableIdentifier 1
PathwayDiagram stableIdentifier 1
ControlledVocabulary stableIdentifier 1
FunctionalStatusType stableIdentifier 1
ChemicalDrug stableIdentifier 1
ReferenceIsoform stableIdentifier 1
ReferenceSequence stableIdentifier 1
ReferenceDatabase stableIdentifier 1
DeletedControlledVocabulary stableIdentifier 1
CrosslinkedResidue stableIdentifier 1
Reaction stableIdentifier 1
ReferenceMolecule stableIdentifier 1
IntraChainCrosslinkedResidue stableIdentifier 1
ReferenceGroup stableIdentifier 1
CatalystActivity stableIdentifier 1
Event stableIdentifier 1
RNADrug stableIdentifier 1
PositiveRegulation stableIdentifier 1
StableIdentifier stableIdentifier 1
GO_MolecularFunction stableIdentifier 1
GeneticallyModifiedResidue stableIdentifier 1
Complex stableIdentifier 1
FragmentDeletionModification stableIdentifier 1
DefinedSet stableIdentifier 1
EntityVertex stableIdentifier 1
CellType stableIdentifier 1
Disease stableIdentifier 1
Summation stableIdentifier 1
Pathway stableIdentifier 1
ReactionlikeEvent stableIdentifier 1
TranslationalModification stableIdentifier 1
GenomeEncodedEntity stableIdentifier 1
EntityWithAccessionedSequence stableIdentifier 1
GroupModifiedResidue stableIdentifier 1
Compartment stableIdentifier 1
Polymerisation stableIdentifier 1
_Release stableIdentifier 1
AbstractModifiedResidue stableIdentifier 1
ReferenceGeneProduct stableIdentifier 1
NegativeGeneExpressionRegulation stableIdentifier 1
CandidateSet stableIdentifier 1
Person stableIdentifier 1
Depolymerisation stableIdentifier 1
Affiliation stableIdentifier 1
Regulation stableIdentifier 1
DatabaseObject stableIdentifier 1
FrontPage stableIdentifier 1
LiteratureReference stableIdentifier 1
GO_BiologicalProcess stableIdentifier 1
ReferenceRNASequence stableIdentifier 1
PhysicalEntity stableIdentifier 1
Polymer stableIdentifier 1
ProteinDrug stableIdentifier 1
_InstanceBeforeChange stableIdentifier 1
GO_CellularComponent stableIdentifier 1
Figure stableIdentifier 1
FailedReaction stableIdentifier 1
FragmentInsertionModification stableIdentifier 1
BlackBoxEvent stableIdentifier 1
EvidenceType stableIdentifier 1
ConcurrentEventSet stableIdentifier 1
ModifiedResidue stableIdentifier 1
PathwayDiagramItem stableIdentifier 1
_AttributeValueBeforeChange stableIdentifier 1
Drug stableIdentifier 1
ReferenceDNASequence stableIdentifier 1
PathwayVertex stableIdentifier 1
ExternalOntology stableIdentifier 1
DatabaseIdentifier stableIdentifier 1
InstanceEdit stableIdentifier 1
EntitySet stableIdentifier 1
OtherEntity stableIdentifier 1
SimpleEntity stableIdentifier 1
PathwayCoordinates stableIdentifier 1
ReferenceTherapeutic stableIdentifier 1
ReactionCoordinates stableIdentifier 1
NegativeRegulation stableIdentifier 1
Publication stableIdentifier 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.