Reactome: A Curated Pathway Database

Attributes of class 'StableIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A StableIdentifier   TEXT
identifierVersion 1 TEXT N/A StableIdentifier   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
oldIdentifier 1 TEXT N/A StableIdentifier   TEXT
oldIdentifierVersion 1 TEXT N/A StableIdentifier   TEXT
released 1 OTHER N/A StableIdentifier   ENUM('TRUE','FALSE')
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'StableIdentifier' instances

Class name Attribute name Cardinality
Polymerisation stableIdentifier 1
_Release stableIdentifier 1
CrosslinkedResidue stableIdentifier 1
ReferenceGeneProduct stableIdentifier 1
ReactionVertex stableIdentifier 1
GenomeEncodedEntity stableIdentifier 1
InterChainCrosslinkedResidue stableIdentifier 1
PathwayCoordinates stableIdentifier 1
ReferenceEntity stableIdentifier 1
BlackBoxEvent stableIdentifier 1
_InstanceBeforeChange stableIdentifier 1
LiteratureReference stableIdentifier 1
PathwayDiagram stableIdentifier 1
PositiveRegulation stableIdentifier 1
PathwayDiagramItem stableIdentifier 1
FragmentReplacedModification stableIdentifier 1
EntityVertex stableIdentifier 1
EvidenceType stableIdentifier 1
_AttributeValueBeforeChange stableIdentifier 1
Edge stableIdentifier 1
PositiveGeneExpressionRegulation stableIdentifier 1
Affiliation stableIdentifier 1
Reaction stableIdentifier 1
Complex stableIdentifier 1
EntitySet stableIdentifier 1
EntityWithAccessionedSequence stableIdentifier 1
FragmentInsertionModification stableIdentifier 1
Vertex stableIdentifier 1
Summation stableIdentifier 1
StableIdentifier stableIdentifier 1
ReferenceDNASequence stableIdentifier 1
GroupModifiedResidue stableIdentifier 1
OpenSet stableIdentifier 1
SimpleEntity stableIdentifier 1
CandidateSet stableIdentifier 1
GO_CellularComponent stableIdentifier 1
PhysicalEntity stableIdentifier 1
Publication stableIdentifier 1
InstanceEdit stableIdentifier 1
AbstractModifiedResidue stableIdentifier 1
NegativeGeneExpressionRegulation stableIdentifier 1
Species stableIdentifier 1
Disease stableIdentifier 1
Regulation stableIdentifier 1
DatabaseObject stableIdentifier 1
Pathway stableIdentifier 1
ConcurrentEventSet stableIdentifier 1
GO_MolecularFunction stableIdentifier 1
PathwayVertex stableIdentifier 1
SequenceOntology stableIdentifier 1
EntityFunctionalStatus stableIdentifier 1
GO_BiologicalProcess stableIdentifier 1
Figure stableIdentifier 1
URL stableIdentifier 1
Book stableIdentifier 1
DeletedControlledVocabulary stableIdentifier 1
Compartment stableIdentifier 1
Depolymerisation stableIdentifier 1
Drug stableIdentifier 1
ChemicalDrug stableIdentifier 1
DatabaseIdentifier stableIdentifier 1
_Deleted stableIdentifier 1
ReactionlikeEvent stableIdentifier 1
ReferenceTherapeutic stableIdentifier 1
ExternalOntology stableIdentifier 1
IntraChainCrosslinkedResidue stableIdentifier 1
FunctionalStatusType stableIdentifier 1
FragmentModification stableIdentifier 1
ReferenceSequence stableIdentifier 1
ReplacedResidue stableIdentifier 1
FrontPage stableIdentifier 1
Requirement stableIdentifier 1
Taxon stableIdentifier 1
FragmentDeletionModification stableIdentifier 1
ReferenceMolecule stableIdentifier 1
Polymer stableIdentifier 1
NegativeRegulation stableIdentifier 1
DefinedSet stableIdentifier 1
PsiMod stableIdentifier 1
ReferenceDatabase stableIdentifier 1
VertexSearchableTerm stableIdentifier 1
CatalystActivity stableIdentifier 1
CellType stableIdentifier 1
ReferenceIsoform stableIdentifier 1
TranslationalModification stableIdentifier 1
RNADrug stableIdentifier 1
ReferenceRNASequence stableIdentifier 1
FailedReaction stableIdentifier 1
ModifiedResidue stableIdentifier 1
ReferenceGroup stableIdentifier 1
Event stableIdentifier 1
Person stableIdentifier 1
ReactionCoordinates stableIdentifier 1
ControlledVocabulary stableIdentifier 1
ProteinDrug stableIdentifier 1
FunctionalStatus stableIdentifier 1
EntityCompartment stableIdentifier 1
OtherEntity stableIdentifier 1
GeneticallyModifiedResidue stableIdentifier 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.