Reactome: A Curated Pathway Database

Attributes of class 'StableIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A StableIdentifier   TEXT
identifierVersion 1 TEXT N/A StableIdentifier   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
oldIdentifier 1 TEXT N/A StableIdentifier   TEXT
oldIdentifierVersion 1 TEXT N/A StableIdentifier   TEXT
released 1 OTHER N/A StableIdentifier   ENUM('TRUE','FALSE')
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'StableIdentifier' instances

Class name Attribute name Cardinality
FunctionalStatus stableIdentifier 1
SimpleEntity stableIdentifier 1
FragmentModification stableIdentifier 1
GO_CellularComponent stableIdentifier 1
CandidateSet stableIdentifier 1
OpenSet stableIdentifier 1
Complex stableIdentifier 1
CellType stableIdentifier 1
ReferenceRNASequence stableIdentifier 1
Affiliation stableIdentifier 1
ReferenceDNASequence stableIdentifier 1
ChemicalDrug stableIdentifier 1
PositiveGeneExpressionRegulation stableIdentifier 1
DefinedSet stableIdentifier 1
IntraChainCrosslinkedResidue stableIdentifier 1
Publication stableIdentifier 1
Reaction stableIdentifier 1
TranslationalModification stableIdentifier 1
EntityFunctionalStatus stableIdentifier 1
SequenceOntology stableIdentifier 1
Book stableIdentifier 1
PositiveRegulation stableIdentifier 1
EntityVertex stableIdentifier 1
Regulation stableIdentifier 1
GO_BiologicalProcess stableIdentifier 1
URL stableIdentifier 1
GroupModifiedResidue stableIdentifier 1
ReferenceEntity stableIdentifier 1
Edge stableIdentifier 1
FunctionalStatusType stableIdentifier 1
FragmentDeletionModification stableIdentifier 1
VertexSearchableTerm stableIdentifier 1
Person stableIdentifier 1
FrontPage stableIdentifier 1
Summation stableIdentifier 1
StableIdentifier stableIdentifier 1
RNADrug stableIdentifier 1
Requirement stableIdentifier 1
Pathway stableIdentifier 1
CrosslinkedResidue stableIdentifier 1
FailedReaction stableIdentifier 1
EntityWithAccessionedSequence stableIdentifier 1
ExternalOntology stableIdentifier 1
PathwayCoordinates stableIdentifier 1
ReferenceTherapeutic stableIdentifier 1
PathwayDiagramItem stableIdentifier 1
Species stableIdentifier 1
NegativeGeneExpressionRegulation stableIdentifier 1
DatabaseObject stableIdentifier 1
GO_MolecularFunction stableIdentifier 1
InstanceEdit stableIdentifier 1
ReferenceIsoform stableIdentifier 1
Taxon stableIdentifier 1
OtherEntity stableIdentifier 1
PathwayVertex stableIdentifier 1
ReferenceSequence stableIdentifier 1
AbstractModifiedResidue stableIdentifier 1
ProteinDrug stableIdentifier 1
BlackBoxEvent stableIdentifier 1
Vertex stableIdentifier 1
ReactionVertex stableIdentifier 1
CatalystActivity stableIdentifier 1
PhysicalEntity stableIdentifier 1
_Deleted stableIdentifier 1
ReferenceDatabase stableIdentifier 1
FragmentReplacedModification stableIdentifier 1
ReactionCoordinates stableIdentifier 1
LiteratureReference stableIdentifier 1
PathwayDiagram stableIdentifier 1
DatabaseIdentifier stableIdentifier 1
Figure stableIdentifier 1
FragmentInsertionModification stableIdentifier 1
ReplacedResidue stableIdentifier 1
DeletedControlledVocabulary stableIdentifier 1
_Release stableIdentifier 1
ReferenceGroup stableIdentifier 1
ControlledVocabulary stableIdentifier 1
EntityCompartment stableIdentifier 1
ReferenceMolecule stableIdentifier 1
NegativeRegulation stableIdentifier 1
Drug stableIdentifier 1
PsiMod stableIdentifier 1
ReactionlikeEvent stableIdentifier 1
Disease stableIdentifier 1
Polymerisation stableIdentifier 1
Compartment stableIdentifier 1
EntitySet stableIdentifier 1
Depolymerisation stableIdentifier 1
Event stableIdentifier 1
ReferenceGeneProduct stableIdentifier 1
GenomeEncodedEntity stableIdentifier 1
_AttributeValueBeforeChange stableIdentifier 1
Polymer stableIdentifier 1
InterChainCrosslinkedResidue stableIdentifier 1
GeneticallyModifiedResidue stableIdentifier 1
EvidenceType stableIdentifier 1
ModifiedResidue stableIdentifier 1
ConcurrentEventSet stableIdentifier 1
_InstanceBeforeChange stableIdentifier 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.