Reactome: A Curated Pathway Database

Attributes of class 'StableIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A StableIdentifier   TEXT
identifierVersion 1 TEXT N/A StableIdentifier   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
oldIdentifier 1 TEXT N/A StableIdentifier   TEXT
oldIdentifierVersion 1 TEXT N/A StableIdentifier   TEXT
released 1 OTHER N/A StableIdentifier   ENUM('TRUE','FALSE')
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'StableIdentifier' instances

Class name Attribute name Cardinality
ReferenceDNASequence stableIdentifier 1
InterChainCrosslinkedResidue stableIdentifier 1
_Deleted stableIdentifier 1
Polymerisation stableIdentifier 1
Drug stableIdentifier 1
FunctionalStatus stableIdentifier 1
BlackBoxEvent stableIdentifier 1
OpenSet stableIdentifier 1
IntraChainCrosslinkedResidue stableIdentifier 1
Species stableIdentifier 1
FragmentModification stableIdentifier 1
CellType stableIdentifier 1
ReferenceIsoform stableIdentifier 1
ProteinDrug stableIdentifier 1
EntityCompartment stableIdentifier 1
ChemicalDrug stableIdentifier 1
Affiliation stableIdentifier 1
SimpleEntity stableIdentifier 1
GO_MolecularFunction stableIdentifier 1
GenomeEncodedEntity stableIdentifier 1
EntityVertex stableIdentifier 1
FunctionalStatusType stableIdentifier 1
EvidenceType stableIdentifier 1
GO_BiologicalProcess stableIdentifier 1
StableIdentifier stableIdentifier 1
VertexSearchableTerm stableIdentifier 1
PositiveRegulation stableIdentifier 1
ExternalOntology stableIdentifier 1
ReferenceTherapeutic stableIdentifier 1
DeletedControlledVocabulary stableIdentifier 1
ReferenceRNASequence stableIdentifier 1
FailedReaction stableIdentifier 1
GroupModifiedResidue stableIdentifier 1
ReactionCoordinates stableIdentifier 1
FragmentReplacedModification stableIdentifier 1
ReplacedResidue stableIdentifier 1
ConcurrentEventSet stableIdentifier 1
CatalystActivity stableIdentifier 1
Depolymerisation stableIdentifier 1
EntitySet stableIdentifier 1
Pathway stableIdentifier 1
Requirement stableIdentifier 1
_InstanceBeforeChange stableIdentifier 1
AbstractModifiedResidue stableIdentifier 1
FragmentInsertionModification stableIdentifier 1
PathwayDiagram stableIdentifier 1
SequenceOntology stableIdentifier 1
Disease stableIdentifier 1
Publication stableIdentifier 1
Regulation stableIdentifier 1
Event stableIdentifier 1
Summation stableIdentifier 1
ReferenceSequence stableIdentifier 1
PhysicalEntity stableIdentifier 1
ControlledVocabulary stableIdentifier 1
ReactionVertex stableIdentifier 1
NegativeGeneExpressionRegulation stableIdentifier 1
ReferenceGeneProduct stableIdentifier 1
Book stableIdentifier 1
PositiveGeneExpressionRegulation stableIdentifier 1
LiteratureReference stableIdentifier 1
FrontPage stableIdentifier 1
Figure stableIdentifier 1
CrosslinkedResidue stableIdentifier 1
ReferenceMolecule stableIdentifier 1
EntityWithAccessionedSequence stableIdentifier 1
PsiMod stableIdentifier 1
ReferenceDatabase stableIdentifier 1
InstanceEdit stableIdentifier 1
Compartment stableIdentifier 1
OtherEntity stableIdentifier 1
PathwayCoordinates stableIdentifier 1
DefinedSet stableIdentifier 1
_AttributeValueBeforeChange stableIdentifier 1
PathwayVertex stableIdentifier 1
ReferenceGroup stableIdentifier 1
RNADrug stableIdentifier 1
ModifiedResidue stableIdentifier 1
TranslationalModification stableIdentifier 1
CandidateSet stableIdentifier 1
Reaction stableIdentifier 1
PathwayDiagramItem stableIdentifier 1
NegativeRegulation stableIdentifier 1
Edge stableIdentifier 1
Person stableIdentifier 1
DatabaseObject stableIdentifier 1
DatabaseIdentifier stableIdentifier 1
GO_CellularComponent stableIdentifier 1
Complex stableIdentifier 1
EntityFunctionalStatus stableIdentifier 1
Polymer stableIdentifier 1
ReferenceEntity stableIdentifier 1
FragmentDeletionModification stableIdentifier 1
ReactionlikeEvent stableIdentifier 1
GeneticallyModifiedResidue stableIdentifier 1
URL stableIdentifier 1
Vertex stableIdentifier 1
_Release stableIdentifier 1
Taxon stableIdentifier 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.