Reactome: A Curated Pathway Database

Attributes of class 'Polymer'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType 1 INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE EntityCompartment PhysicalEntity   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredProt 1 TEXT N/A Polymer   TEXT
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
maxHomologues 1 TEXT N/A Polymer   TEXT
maxUnitCount 1 INTEGER N/A Polymer   INTEGER(10)
minUnitCount 1 INTEGER N/A Polymer   INTEGER(10)
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
repeatedUnit + INSTANCE PhysicalEntity Polymer ALL INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species + INSTANCE Species Polymer   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT
totalProt 1 TEXT N/A Polymer   TEXT

Referers of class 'Polymer' instances

Class name Attribute name Cardinality
VertexSearchableTerm termProvider +
_Deleted replacementInstances +
RNADrug inferredFrom +
GenomeEncodedEntity inferredFrom +
PhysicalEntity inferredFrom +
Drug inferredFrom +
Polymer inferredFrom +
CandidateSet inferredFrom +
ChemicalDrug inferredFrom +
EntitySet inferredFrom +
DefinedSet inferredFrom +
Complex inferredFrom +
OtherEntity inferredFrom +
ProteinDrug inferredFrom +
SimpleEntity inferredFrom +
EntityWithAccessionedSequence inferredFrom +
OpenSet inferredFrom +
Reaction output +
Polymerisation output +
ReactionlikeEvent output +
BlackBoxEvent output +
FailedReaction output +
Depolymerisation output +
EntityFunctionalStatus physicalEntity 1
CatalystActivity physicalEntity 1
ReactionlikeEvent requiredInputComponent +
BlackBoxEvent requiredInputComponent +
FailedReaction requiredInputComponent +
Depolymerisation requiredInputComponent +
Reaction requiredInputComponent +
Polymerisation requiredInputComponent +
GenomeEncodedEntity inferredTo +
RNADrug inferredTo +
Polymer inferredTo +
PhysicalEntity inferredTo +
Drug inferredTo +
CandidateSet inferredTo +
EntitySet inferredTo +
ChemicalDrug inferredTo +
Complex inferredTo +
OtherEntity inferredTo +
DefinedSet inferredTo +
ProteinDrug inferredTo +
EntityWithAccessionedSequence inferredTo +
OpenSet inferredTo +
SimpleEntity inferredTo +
NegativeRegulation activeUnit +
NegativeGeneExpressionRegulation activeUnit +
CatalystActivity activeUnit +
PositiveGeneExpressionRegulation activeUnit +
Regulation activeUnit +
PositiveRegulation activeUnit +
Requirement activeUnit +
Complex hasComponent +
PositiveGeneExpressionRegulation regulator 1
NegativeGeneExpressionRegulation regulator 1
NegativeRegulation regulator 1
Regulation regulator 1
Requirement regulator 1
PositiveRegulation regulator 1
IntraChainCrosslinkedResidue modification 1
CrosslinkedResidue modification 1
InterChainCrosslinkedResidue modification 1
GroupModifiedResidue modification 1
Depolymerisation input +
BlackBoxEvent input +
ReactionlikeEvent input +
FailedReaction input +
Polymerisation input +
Reaction input +
ConcurrentEventSet focusEntity +
DefinedSet hasMember +
OpenSet hasMember +
EntitySet hasMember +
CandidateSet hasMember +
CandidateSet hasCandidate +
Depolymerisation entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
FailedReaction entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
Polymerisation entityOnOtherCell +
Complex entityOnOtherCell +
Reaction entityOnOtherCell +
EntityVertex representedInstance 1
Polymer repeatedUnit +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.