Reactome: A Curated Pathway Database

Attributes of class 'LiteratureReference'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person Publication   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
journal 1 TEXT N/A LiteratureReference   varchar(255)
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
pages 1 TEXT N/A LiteratureReference   TEXT
pubMedIdentifier 1 INTEGER N/A LiteratureReference ALL INTEGER(10)
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
title 1 TEXT N/A Publication   TEXT
volume 1 INTEGER N/A LiteratureReference   INTEGER(10)
year 1 INTEGER N/A LiteratureReference   INTEGER(10)

Referers of class 'LiteratureReference' instances

Class name Attribute name Cardinality
PositiveGeneExpressionRegulation literatureReference +
RNADrug literatureReference +
GenomeEncodedEntity literatureReference +
EntitySet literatureReference +
NegativeRegulation literatureReference +
Drug literatureReference +
DefinedSet literatureReference +
OpenSet literatureReference +
ChemicalDrug literatureReference +
ReactionlikeEvent literatureReference +
Depolymerisation literatureReference +
PhysicalEntity literatureReference +
FailedReaction literatureReference +
ProteinDrug literatureReference +
NegativeGeneExpressionRegulation literatureReference +
SimpleEntity literatureReference +
Pathway literatureReference +
Polymer literatureReference +
Reaction literatureReference +
EntityWithAccessionedSequence literatureReference +
Requirement literatureReference +
Polymerisation literatureReference +
CandidateSet literatureReference +
Complex literatureReference +
PositiveRegulation literatureReference +
CatalystActivity literatureReference +
OtherEntity literatureReference +
Regulation literatureReference +
BlackBoxEvent literatureReference +
Summation literatureReference +
Event literatureReference +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.