Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
_InstanceBeforeChange instanceEdit 1
ReferenceEntity created 1
Summation created 1
InstanceEdit created 1
FailedReaction created 1
PathwayDiagram created 1
Edge created 1
VertexSearchableTerm created 1
ProteinDrug created 1
PhysicalEntity created 1
PathwayCoordinates created 1
SimpleEntity created 1
GeneticallyModifiedResidue created 1
Compartment created 1
DatabaseObject created 1
FragmentReplacedModification created 1
Publication created 1
ReplacedResidue created 1
PathwayDiagramItem created 1
Taxon created 1
TranslationalModification created 1
EntityCompartment created 1
ChemicalDrug created 1
ReferenceDatabase created 1
ReactionlikeEvent created 1
Vertex created 1
Reaction created 1
GO_BiologicalProcess created 1
PathwayVertex created 1
ReferenceRNASequence created 1
Affiliation created 1
NegativeGeneExpressionRegulation created 1
AbstractModifiedResidue created 1
GO_CellularComponent created 1
GenomeEncodedEntity created 1
ConcurrentEventSet created 1
URL created 1
Regulation created 1
LiteratureReference created 1
ReferenceTherapeutic created 1
FragmentDeletionModification created 1
SequenceOntology created 1
Species created 1
PositiveGeneExpressionRegulation created 1
EntityFunctionalStatus created 1
Complex created 1
Drug created 1
Polymerisation created 1
OpenSet created 1
ReferenceGroup created 1
Pathway created 1
CatalystActivity created 1
ExternalOntology created 1
BlackBoxEvent created 1
Disease created 1
NegativeRegulation created 1
EntityVertex created 1
_Deleted created 1
ReferenceSequence created 1
InterChainCrosslinkedResidue created 1
_AttributeValueBeforeChange created 1
EntityWithAccessionedSequence created 1
DatabaseIdentifier created 1
FragmentInsertionModification created 1
FrontPage created 1
EntitySet created 1
Figure created 1
Polymer created 1
ReactionCoordinates created 1
FragmentModification created 1
ModifiedResidue created 1
Depolymerisation created 1
DeletedControlledVocabulary created 1
_Release created 1
GO_MolecularFunction created 1
Event created 1
ControlledVocabulary created 1
GroupModifiedResidue created 1
PositiveRegulation created 1
StableIdentifier created 1
_InstanceBeforeChange created 1
ReferenceDNASequence created 1
FunctionalStatusType created 1
Person created 1
CrosslinkedResidue created 1
Requirement created 1
CandidateSet created 1
CellType created 1
IntraChainCrosslinkedResidue created 1
PsiMod created 1
DefinedSet created 1
OtherEntity created 1
ReferenceMolecule created 1
ReferenceIsoform created 1
ReferenceGeneProduct created 1
Book created 1
EvidenceType created 1
RNADrug created 1
FunctionalStatus created 1
ReactionVertex created 1
BlackBoxEvent edited +
Pathway edited +
Polymer edited +
Reaction edited +
OtherEntity edited +
ReactionlikeEvent edited +
DefinedSet edited +
ChemicalDrug edited +
EntitySet edited +
Requirement edited +
OpenSet edited +
CandidateSet edited +
Polymerisation edited +
Drug edited +
GenomeEncodedEntity edited +
RNADrug edited +
NegativeGeneExpressionRegulation edited +
Depolymerisation edited +
NegativeRegulation edited +
SimpleEntity edited +
PhysicalEntity edited +
ProteinDrug edited +
PositiveRegulation edited +
Regulation edited +
FailedReaction edited +
EntityWithAccessionedSequence edited +
Event edited +
Complex edited +
PositiveGeneExpressionRegulation edited +
DefinedSet authored 1
ReactionlikeEvent authored +
ChemicalDrug authored 1
CandidateSet authored 1
Requirement authored 1
EntitySet authored 1
OpenSet authored 1
Drug authored 1
Polymerisation authored +
BlackBoxEvent authored +
Pathway authored +
Reaction authored +
Polymer authored 1
OtherEntity authored 1
NegativeGeneExpressionRegulation authored 1
Depolymerisation authored +
NegativeRegulation authored 1
GenomeEncodedEntity authored 1
RNADrug authored 1
PositiveRegulation authored 1
Regulation authored 1
EntityWithAccessionedSequence authored 1
FailedReaction authored +
Event authored +
SimpleEntity authored 1
PhysicalEntity authored 1
ProteinDrug authored 1
Complex authored 1
PositiveGeneExpressionRegulation authored 1
Book modified +
FunctionalStatus modified +
EvidenceType modified +
RNADrug modified +
ReactionVertex modified +
CandidateSet modified +
Requirement modified +
DefinedSet modified +
PsiMod modified +
IntraChainCrosslinkedResidue modified +
CellType modified +
OtherEntity modified +
ReferenceIsoform modified +
ReferenceGeneProduct modified +
ReferenceMolecule modified +
_InstanceBeforeChange modified +
ReferenceDNASequence modified +
FunctionalStatusType modified +
CrosslinkedResidue modified +
Person modified +
ControlledVocabulary modified +
GO_MolecularFunction modified +
Event modified +
_Release modified +
PositiveRegulation modified +
GroupModifiedResidue modified +
StableIdentifier modified +
Depolymerisation modified +
DeletedControlledVocabulary modified +
EntitySet modified +
Figure modified +
Polymer modified +
ReactionCoordinates modified +
FragmentModification modified +
ModifiedResidue modified +
FrontPage modified +
DatabaseIdentifier modified +
EntityWithAccessionedSequence modified +
FragmentInsertionModification modified +
NegativeRegulation modified +
Disease modified +
ReferenceSequence modified +
_Deleted modified +
EntityVertex modified +
InterChainCrosslinkedResidue modified +
_AttributeValueBeforeChange modified +
OpenSet modified +
Polymerisation modified +
Drug modified +
ExternalOntology modified +
CatalystActivity modified +
BlackBoxEvent modified +
Pathway modified +
ReferenceGroup modified +
Species modified +
SequenceOntology modified +
FragmentDeletionModification modified +
Complex modified +
PositiveGeneExpressionRegulation modified +
EntityFunctionalStatus modified +
URL modified +
Regulation modified +
ReferenceTherapeutic modified +
LiteratureReference modified +
Affiliation modified +
NegativeGeneExpressionRegulation modified +
GO_CellularComponent modified +
AbstractModifiedResidue modified +
ConcurrentEventSet modified +
GenomeEncodedEntity modified +
EntityCompartment modified +
ChemicalDrug modified +
Vertex modified +
ReferenceDatabase modified +
ReactionlikeEvent modified +
Reaction modified +
ReferenceRNASequence modified +
PathwayVertex modified +
GO_BiologicalProcess modified +
Compartment modified +
ReplacedResidue modified +
PathwayDiagramItem modified +
Taxon modified +
TranslationalModification modified +
DatabaseObject modified +
FragmentReplacedModification modified +
Publication modified +
InstanceEdit modified +
ReferenceEntity modified +
Summation modified +
PathwayDiagram modified +
Edge modified +
FailedReaction modified +
PhysicalEntity modified +
ProteinDrug modified +
VertexSearchableTerm modified +
GeneticallyModifiedResidue modified +
SimpleEntity modified +
PathwayCoordinates modified +
PositiveGeneExpressionRegulation revised +
Complex revised +
ProteinDrug revised +
PhysicalEntity revised +
SimpleEntity revised +
Event revised +
EntityWithAccessionedSequence revised +
FailedReaction revised +
Regulation revised +
PositiveRegulation revised +
RNADrug revised +
GenomeEncodedEntity revised +
NegativeRegulation revised +
Depolymerisation revised +
NegativeGeneExpressionRegulation revised +
Reaction revised +
Polymer revised +
OtherEntity revised +
Pathway revised +
BlackBoxEvent revised +
Polymerisation revised +
Drug revised +
ChemicalDrug revised +
OpenSet revised +
CandidateSet revised +
Requirement revised +
EntitySet revised +
ReactionlikeEvent revised +
DefinedSet revised +
RNADrug reviewed +
GenomeEncodedEntity reviewed +
Depolymerisation reviewed +
NegativeRegulation reviewed +
NegativeGeneExpressionRegulation reviewed +
Reaction reviewed +
OtherEntity reviewed +
Polymer reviewed +
BlackBoxEvent reviewed +
Pathway reviewed +
ChemicalDrug reviewed +
Requirement reviewed +
CandidateSet reviewed +
OpenSet reviewed +
EntitySet reviewed +
Drug reviewed +
Polymerisation reviewed +
ReactionlikeEvent reviewed +
DefinedSet reviewed +
Complex reviewed +
PositiveGeneExpressionRegulation reviewed +
PhysicalEntity reviewed +
ProteinDrug reviewed +
SimpleEntity reviewed +
Event reviewed +
Regulation reviewed +
PositiveRegulation reviewed +
EntityWithAccessionedSequence reviewed +
FailedReaction reviewed +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.