Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
Pathway edited +
DefinedSet edited +
ChemicalDrug edited +
Polymerisation edited +
Complex edited +
ProteinDrug edited +
PositiveRegulation edited +
Event edited +
NegativeRegulation edited +
NegativeGeneExpressionRegulation edited +
PhysicalEntity edited +
OtherEntity edited +
GenomeEncodedEntity edited +
FailedReaction edited +
BlackBoxEvent edited +
Depolymerisation edited +
CandidateSet edited +
OpenSet edited +
EntityWithAccessionedSequence edited +
Polymer edited +
Regulation edited +
RNADrug edited +
SimpleEntity edited +
Drug edited +
PositiveGeneExpressionRegulation edited +
EntitySet edited +
ReactionlikeEvent edited +
Reaction edited +
Requirement edited +
_InstanceBeforeChange instanceEdit 1
OpenSet authored 1
CandidateSet authored 1
Polymer authored 1
EntityWithAccessionedSequence authored 1
Regulation authored 1
GenomeEncodedEntity authored 1
FailedReaction authored +
BlackBoxEvent authored +
Depolymerisation authored +
RNADrug authored 1
SimpleEntity authored 1
Drug authored 1
PositiveGeneExpressionRegulation authored 1
EntitySet authored 1
ReactionlikeEvent authored +
Requirement authored 1
Reaction authored +
Pathway authored +
Complex authored 1
DefinedSet authored 1
Polymerisation authored +
ChemicalDrug authored 1
Event authored +
NegativeRegulation authored 1
NegativeGeneExpressionRegulation authored 1
ProteinDrug authored 1
PositiveRegulation authored 1
OtherEntity authored 1
PhysicalEntity authored 1
RNADrug revised +
SimpleEntity revised +
Drug revised +
FailedReaction revised +
GenomeEncodedEntity revised +
BlackBoxEvent revised +
Depolymerisation revised +
CandidateSet revised +
EntityWithAccessionedSequence revised +
OpenSet revised +
Polymer revised +
Regulation revised +
Requirement revised +
Reaction revised +
PositiveGeneExpressionRegulation revised +
EntitySet revised +
ReactionlikeEvent revised +
DefinedSet revised +
Polymerisation revised +
ChemicalDrug revised +
Complex revised +
Pathway revised +
PhysicalEntity revised +
OtherEntity revised +
ProteinDrug revised +
PositiveRegulation revised +
Event revised +
NegativeRegulation revised +
NegativeGeneExpressionRegulation revised +
EntitySet reviewed +
ReactionlikeEvent reviewed +
PositiveGeneExpressionRegulation reviewed +
Requirement reviewed +
Reaction reviewed +
BlackBoxEvent reviewed +
Depolymerisation reviewed +
GenomeEncodedEntity reviewed +
FailedReaction reviewed +
Regulation reviewed +
CandidateSet reviewed +
Polymer reviewed +
OpenSet reviewed +
EntityWithAccessionedSequence reviewed +
SimpleEntity reviewed +
Drug reviewed +
RNADrug reviewed +
PositiveRegulation reviewed +
ProteinDrug reviewed +
NegativeGeneExpressionRegulation reviewed +
NegativeRegulation reviewed +
Event reviewed +
PhysicalEntity reviewed +
OtherEntity reviewed +
Pathway reviewed +
ChemicalDrug reviewed +
Polymerisation reviewed +
DefinedSet reviewed +
Complex reviewed +
FrontPage created 1
EvidenceType created 1
PositiveGeneExpressionRegulation created 1
EntityCompartment created 1
Drug created 1
CrosslinkedResidue created 1
DeletedControlledVocabulary created 1
IntraChainCrosslinkedResidue created 1
FragmentInsertionModification created 1
Book created 1
_Deleted created 1
DatabaseObject created 1
Taxon created 1
Regulation created 1
Affiliation created 1
CandidateSet created 1
ReferenceTherapeutic created 1
GeneticallyModifiedResidue created 1
Event created 1
GO_CellularComponent created 1
ChemicalDrug created 1
FragmentModification created 1
PsiMod created 1
ConcurrentEventSet created 1
Compartment created 1
Figure created 1
Requirement created 1
Person created 1
URL created 1
Vertex created 1
ReplacedResidue created 1
InterChainCrosslinkedResidue created 1
_Release created 1
Depolymerisation created 1
GenomeEncodedEntity created 1
FailedReaction created 1
OpenSet created 1
Polymer created 1
PhysicalEntity created 1
EntityVertex created 1
ControlledVocabulary created 1
EntityFunctionalStatus created 1
GO_MolecularFunction created 1
GroupModifiedResidue created 1
Complex created 1
ReferenceRNASequence created 1
ReferenceEntity created 1
ReactionVertex created 1
InstanceEdit created 1
_AttributeValueBeforeChange created 1
ReactionlikeEvent created 1
EntitySet created 1
ReferenceDatabase created 1
ReferenceSequence created 1
SimpleEntity created 1
BlackBoxEvent created 1
ReferenceGeneProduct created 1
StableIdentifier created 1
PathwayVertex created 1
PathwayDiagram created 1
OtherEntity created 1
TranslationalModification created 1
ProteinDrug created 1
NegativeRegulation created 1
Polymerisation created 1
FragmentDeletionModification created 1
Summation created 1
CatalystActivity created 1
PathwayDiagramItem created 1
GO_BiologicalProcess created 1
LiteratureReference created 1
Species created 1
Reaction created 1
FunctionalStatus created 1
Publication created 1
CellType created 1
PathwayCoordinates created 1
FunctionalStatusType created 1
ReferenceIsoform created 1
RNADrug created 1
_InstanceBeforeChange created 1
DatabaseIdentifier created 1
SequenceOntology created 1
FragmentReplacedModification created 1
EntityWithAccessionedSequence created 1
ReactionCoordinates created 1
ReferenceMolecule created 1
Disease created 1
PositiveRegulation created 1
AbstractModifiedResidue created 1
NegativeGeneExpressionRegulation created 1
ReferenceGroup created 1
ExternalOntology created 1
ReferenceDNASequence created 1
VertexSearchableTerm created 1
DefinedSet created 1
Edge created 1
Pathway created 1
ModifiedResidue created 1
Edge modified +
ModifiedResidue modified +
Pathway modified +
ReferenceDNASequence modified +
VertexSearchableTerm modified +
DefinedSet modified +
PositiveRegulation modified +
AbstractModifiedResidue modified +
NegativeGeneExpressionRegulation modified +
ReferenceGroup modified +
ExternalOntology modified +
ReactionCoordinates modified +
Disease modified +
ReferenceMolecule modified +
SequenceOntology modified +
FragmentReplacedModification modified +
EntityWithAccessionedSequence modified +
FunctionalStatusType modified +
ReferenceIsoform modified +
RNADrug modified +
_InstanceBeforeChange modified +
DatabaseIdentifier modified +
PathwayCoordinates modified +
Reaction modified +
Species modified +
Publication modified +
FunctionalStatus modified +
CellType modified +
CatalystActivity modified +
GO_BiologicalProcess modified +
PathwayDiagramItem modified +
LiteratureReference modified +
Polymerisation modified +
FragmentDeletionModification modified +
Summation modified +
ProteinDrug modified +
TranslationalModification modified +
NegativeRegulation modified +
ReferenceGeneProduct modified +
StableIdentifier modified +
PathwayVertex modified +
PathwayDiagram modified +
OtherEntity modified +
BlackBoxEvent modified +
SimpleEntity modified +
EntitySet modified +
ReferenceDatabase modified +
ReactionlikeEvent modified +
ReferenceSequence modified +
InstanceEdit modified +
_AttributeValueBeforeChange modified +
ReferenceRNASequence modified +
ReferenceEntity modified +
ReactionVertex modified +
GroupModifiedResidue modified +
Complex modified +
EntityFunctionalStatus modified +
GO_MolecularFunction modified +
PhysicalEntity modified +
EntityVertex modified +
ControlledVocabulary modified +
Depolymerisation modified +
GenomeEncodedEntity modified +
FailedReaction modified +
OpenSet modified +
Polymer modified +
_Release modified +
Vertex modified +
URL modified +
ReplacedResidue modified +
InterChainCrosslinkedResidue modified +
Compartment modified +
Figure modified +
Requirement modified +
Person modified +
ConcurrentEventSet modified +
ChemicalDrug modified +
FragmentModification modified +
PsiMod modified +
GeneticallyModifiedResidue modified +
Event modified +
GO_CellularComponent modified +
ReferenceTherapeutic modified +
_Deleted modified +
DatabaseObject modified +
Taxon modified +
Regulation modified +
Affiliation modified +
CandidateSet modified +
Drug modified +
CrosslinkedResidue modified +
DeletedControlledVocabulary modified +
FragmentInsertionModification modified +
IntraChainCrosslinkedResidue modified +
Book modified +
FrontPage modified +
EvidenceType modified +
PositiveGeneExpressionRegulation modified +
EntityCompartment modified +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.