Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
GenomeEncodedEntity reviewed +
EntityWithAccessionedSequence reviewed +
Polymerisation reviewed +
PositiveGeneExpressionRegulation reviewed +
Depolymerisation reviewed +
OpenSet reviewed +
NegativeGeneExpressionRegulation reviewed +
ReactionlikeEvent reviewed +
Polymer reviewed +
Pathway reviewed +
DefinedSet reviewed +
Requirement reviewed +
FailedReaction reviewed +
EntitySet reviewed +
BlackBoxEvent reviewed +
CandidateSet reviewed +
NegativeRegulation reviewed +
OtherEntity reviewed +
PositiveRegulation reviewed +
SimpleEntity reviewed +
Complex reviewed +
Reaction reviewed +
Event reviewed +
Regulation reviewed +
PhysicalEntity reviewed +
Depolymerisation edited +
OpenSet edited +
EntityWithAccessionedSequence edited +
Polymerisation edited +
PositiveGeneExpressionRegulation edited +
GenomeEncodedEntity edited +
EntitySet edited +
Requirement edited +
DefinedSet edited +
FailedReaction edited +
Pathway edited +
NegativeGeneExpressionRegulation edited +
ReactionlikeEvent edited +
Polymer edited +
NegativeRegulation edited +
OtherEntity edited +
PositiveRegulation edited +
BlackBoxEvent edited +
CandidateSet edited +
Regulation edited +
PhysicalEntity edited +
Event edited +
Reaction edited +
SimpleEntity edited +
Complex edited +
GO_CellularComponent modified +
Complex modified +
SimpleEntity modified +
InterChainCrosslinkedResidue modified +
_Release modified +
Vertex modified +
ReferenceMolecule modified +
Event modified +
FunctionalStatus modified +
ReferenceSequence modified +
ReferenceDatabase modified +
ReactionCoordinates modified +
ReferenceIsoform modified +
FunctionalStatusType modified +
GeneticallyModifiedResidue modified +
NegativeGeneExpressionRegulation modified +
AbstractModifiedResidue modified +
PathwayDiagramItem modified +
DefinedSet modified +
Taxon modified +
ReplacedResidue modified +
ReferenceRNASequence modified +
ModifiedResidue modified +
Species modified +
ReactionVertex modified +
Depolymerisation modified +
Compartment modified +
Affiliation modified +
FragmentModification modified +
EntityCompartment modified +
_AttributeValueBeforeChange modified +
Reaction modified +
Book modified +
CrosslinkedResidue modified +
StableIdentifier modified +
EntityVertex modified +
PathwayVertex modified +
PhysicalEntity modified +
BlackBoxEvent modified +
EvidenceType modified +
FailedReaction modified +
URL modified +
PathwayCoordinates modified +
FrontPage modified +
ReferenceDNASequence modified +
FragmentDeletionModification modified +
OpenSet modified +
PositiveGeneExpressionRegulation modified +
DatabaseIdentifier modified +
ControlledVocabulary modified +
Figure modified +
Disease modified +
EntityFunctionalStatus modified +
ConcurrentEventSet modified +
FragmentReplacedModification modified +
ReferenceGeneProduct modified +
Person modified +
CandidateSet modified +
PsiMod modified +
PositiveRegulation modified +
_Deleted modified +
InstanceEdit modified +
Pathway modified +
Polymer modified +
Edge modified +
IntraChainCrosslinkedResidue modified +
VertexSearchableTerm modified +
TranslationalModification modified +
Requirement modified +
Publication modified +
GenomeEncodedEntity modified +
Polymerisation modified +
_InstanceBeforeChange modified +
DeletedControlledVocabulary modified +
ReferenceGroup modified +
SequenceOntology modified +
FragmentInsertionModification modified +
Regulation modified +
GroupModifiedResidue modified +
GO_MolecularFunction modified +
Summation modified +
ReferenceEntity modified +
OtherEntity modified +
NegativeRegulation modified +
DatabaseObject modified +
ReactionlikeEvent modified +
GO_BiologicalProcess modified +
CatalystActivity modified +
ExternalOntology modified +
EntitySet modified +
CellType modified +
PathwayDiagram modified +
LiteratureReference modified +
EntityWithAccessionedSequence modified +
_InstanceBeforeChange instanceEdit 1
NegativeGeneExpressionRegulation revised +
Polymer revised +
ReactionlikeEvent revised +
Pathway revised +
DefinedSet revised +
Requirement revised +
FailedReaction revised +
EntitySet revised +
GenomeEncodedEntity revised +
EntityWithAccessionedSequence revised +
Polymerisation revised +
PositiveGeneExpressionRegulation revised +
OpenSet revised +
Depolymerisation revised +
SimpleEntity revised +
Complex revised +
Reaction revised +
Event revised +
Regulation revised +
PhysicalEntity revised +
BlackBoxEvent revised +
CandidateSet revised +
NegativeRegulation revised +
OtherEntity revised +
PositiveRegulation revised +
Pathway authored +
Polymer authored 1
ReactionlikeEvent authored +
NegativeGeneExpressionRegulation authored 1
EntitySet authored 1
FailedReaction authored +
Requirement authored 1
DefinedSet authored 1
GenomeEncodedEntity authored 1
OpenSet authored 1
Depolymerisation authored +
PositiveGeneExpressionRegulation authored 1
Polymerisation authored +
EntityWithAccessionedSequence authored 1
Reaction authored +
Complex authored 1
SimpleEntity authored 1
PhysicalEntity authored 1
Regulation authored 1
Event authored +
CandidateSet authored 1
BlackBoxEvent authored +
PositiveRegulation authored 1
NegativeRegulation authored 1
OtherEntity authored 1
DeletedControlledVocabulary created 1
Polymerisation created 1
_InstanceBeforeChange created 1
Publication created 1
GenomeEncodedEntity created 1
IntraChainCrosslinkedResidue created 1
TranslationalModification created 1
Requirement created 1
VertexSearchableTerm created 1
Pathway created 1
InstanceEdit created 1
Edge created 1
Polymer created 1
_Deleted created 1
PsiMod created 1
PositiveRegulation created 1
ReferenceGeneProduct created 1
Person created 1
CandidateSet created 1
ConcurrentEventSet created 1
FragmentReplacedModification created 1
Disease created 1
ControlledVocabulary created 1
Figure created 1
EntityFunctionalStatus created 1
LiteratureReference created 1
EntityWithAccessionedSequence created 1
CellType created 1
EntitySet created 1
ExternalOntology created 1
PathwayDiagram created 1
DatabaseObject created 1
GO_BiologicalProcess created 1
CatalystActivity created 1
ReactionlikeEvent created 1
NegativeRegulation created 1
OtherEntity created 1
ReferenceEntity created 1
Summation created 1
Regulation created 1
FragmentInsertionModification created 1
SequenceOntology created 1
GO_MolecularFunction created 1
GroupModifiedResidue created 1
ReferenceGroup created 1
Depolymerisation created 1
Compartment created 1
Species created 1
ReactionVertex created 1
EntityCompartment created 1
_AttributeValueBeforeChange created 1
FragmentModification created 1
Affiliation created 1
ReferenceRNASequence created 1
ModifiedResidue created 1
PathwayDiagramItem created 1
AbstractModifiedResidue created 1
DefinedSet created 1
Taxon created 1
ReplacedResidue created 1
FunctionalStatusType created 1
NegativeGeneExpressionRegulation created 1
GeneticallyModifiedResidue created 1
ReactionCoordinates created 1
ReferenceIsoform created 1
ReferenceSequence created 1
FunctionalStatus created 1
ReferenceDatabase created 1
_Release created 1
InterChainCrosslinkedResidue created 1
ReferenceMolecule created 1
Event created 1
Vertex created 1
GO_CellularComponent created 1
SimpleEntity created 1
Complex created 1
OpenSet created 1
FragmentDeletionModification created 1
DatabaseIdentifier created 1
PositiveGeneExpressionRegulation created 1
ReferenceDNASequence created 1
PathwayCoordinates created 1
FrontPage created 1
FailedReaction created 1
URL created 1
EvidenceType created 1
BlackBoxEvent created 1
PhysicalEntity created 1
PathwayVertex created 1
CrosslinkedResidue created 1
StableIdentifier created 1
Book created 1
Reaction created 1
EntityVertex created 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.