Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
Polymerisation revised +
RNADrug revised +
Requirement revised +
BlackBoxEvent revised +
EntitySet revised +
Regulation revised +
NegativeGeneExpressionRegulation revised +
Depolymerisation revised +
GenomeEncodedEntity revised +
DefinedSet revised +
OtherEntity revised +
Event revised +
NegativeRegulation revised +
ChemicalDrug revised +
SimpleEntity revised +
OpenSet revised +
Complex revised +
Polymer revised +
FailedReaction revised +
Pathway revised +
PositiveGeneExpressionRegulation revised +
PositiveRegulation revised +
CandidateSet revised +
EntityWithAccessionedSequence revised +
ReactionlikeEvent revised +
Drug revised +
ProteinDrug revised +
PhysicalEntity revised +
Reaction revised +
EntityFunctionalStatus modified +
Taxon modified +
ReplacedResidue modified +
InstanceEdit modified +
Drug modified +
Species modified +
ConcurrentEventSet modified +
SimpleEntity modified +
Publication modified +
ExternalOntology modified +
Affiliation modified +
DeletedControlledVocabulary modified +
OpenSet modified +
FrontPage modified +
ReferenceEntity modified +
EntityVertex modified +
CrosslinkedResidue modified +
OtherEntity modified +
Event modified +
ReactionCoordinates modified +
Summation modified +
NegativeRegulation modified +
Disease modified +
CellType modified +
BlackBoxEvent modified +
ReferenceDatabase modified +
ReferenceSequence modified +
Figure modified +
PositiveGeneExpressionRegulation modified +
CandidateSet modified +
EntityWithAccessionedSequence modified +
TranslationalModification modified +
FunctionalStatus modified +
EvidenceType modified +
PathwayCoordinates modified +
ReferenceMolecule modified +
ModifiedResidue modified +
Polymer modified +
FailedReaction modified +
DatabaseObject modified +
PathwayDiagram modified +
Regulation modified +
AbstractModifiedResidue modified +
DatabaseIdentifier modified +
VertexSearchableTerm modified +
Edge modified +
Polymerisation modified +
GroupModifiedResidue modified +
GO_CellularComponent modified +
EntitySet modified +
ReferenceGroup modified +
ReferenceGeneProduct modified +
ReferenceIsoform modified +
ReferenceTherapeutic modified +
FragmentReplacedModification modified +
URL modified +
FragmentModification modified +
InterChainCrosslinkedResidue modified +
IntraChainCrosslinkedResidue modified +
Compartment modified +
GO_MolecularFunction modified +
PhysicalEntity modified +
ReferenceRNASequence modified +
StableIdentifier modified +
Complex modified +
_InstanceBeforeChange modified +
Pathway modified +
Person modified +
_Release modified +
NegativeGeneExpressionRegulation modified +
Depolymerisation modified +
DefinedSet modified +
Book modified +
CatalystActivity modified +
RNADrug modified +
Requirement modified +
LiteratureReference modified +
_AttributeValueBeforeChange modified +
PositiveRegulation modified +
FragmentInsertionModification modified +
ReactionlikeEvent modified +
PathwayVertex modified +
ProteinDrug modified +
Vertex modified +
ControlledVocabulary modified +
Reaction modified +
ChemicalDrug modified +
EntityCompartment modified +
FunctionalStatusType modified +
GO_BiologicalProcess modified +
FragmentDeletionModification modified +
SequenceOntology modified +
GenomeEncodedEntity modified +
_Deleted modified +
GeneticallyModifiedResidue modified +
ReferenceDNASequence modified +
PathwayDiagramItem modified +
ReactionVertex modified +
PsiMod modified +
Regulation edited +
Depolymerisation edited +
NegativeGeneExpressionRegulation edited +
GenomeEncodedEntity edited +
DefinedSet edited +
OtherEntity edited +
Event edited +
NegativeRegulation edited +
RNADrug edited +
Polymerisation edited +
Requirement edited +
BlackBoxEvent edited +
EntitySet edited +
PositiveGeneExpressionRegulation edited +
PositiveRegulation edited +
CandidateSet edited +
EntityWithAccessionedSequence edited +
ReactionlikeEvent edited +
Drug edited +
ProteinDrug edited +
Reaction edited +
PhysicalEntity edited +
ChemicalDrug edited +
SimpleEntity edited +
Complex edited +
OpenSet edited +
Polymer edited +
Pathway edited +
FailedReaction edited +
ReactionlikeEvent reviewed +
EntityWithAccessionedSequence reviewed +
PositiveRegulation reviewed +
CandidateSet reviewed +
PositiveGeneExpressionRegulation reviewed +
PhysicalEntity reviewed +
Reaction reviewed +
ProteinDrug reviewed +
Drug reviewed +
SimpleEntity reviewed +
ChemicalDrug reviewed +
FailedReaction reviewed +
Pathway reviewed +
Polymer reviewed +
OpenSet reviewed +
Complex reviewed +
Depolymerisation reviewed +
GenomeEncodedEntity reviewed +
NegativeGeneExpressionRegulation reviewed +
Regulation reviewed +
NegativeRegulation reviewed +
Event reviewed +
OtherEntity reviewed +
DefinedSet reviewed +
Requirement reviewed +
RNADrug reviewed +
Polymerisation reviewed +
BlackBoxEvent reviewed +
EntitySet reviewed +
EntityWithAccessionedSequence authored 1
ReactionlikeEvent authored +
PositiveGeneExpressionRegulation authored 1
PositiveRegulation authored 1
CandidateSet authored 1
ProteinDrug authored 1
PhysicalEntity authored 1
Reaction authored +
Drug authored 1
ChemicalDrug authored 1
SimpleEntity authored 1
FailedReaction authored +
Pathway authored +
Complex authored 1
OpenSet authored 1
Polymer authored 1
NegativeGeneExpressionRegulation authored 1
GenomeEncodedEntity authored 1
Depolymerisation authored +
Regulation authored 1
Event authored +
NegativeRegulation authored 1
DefinedSet authored 1
OtherEntity authored 1
Polymerisation authored +
RNADrug authored 1
Requirement authored 1
BlackBoxEvent authored +
EntitySet authored 1
PathwayDiagramItem created 1
PsiMod created 1
ReactionVertex created 1
GenomeEncodedEntity created 1
SequenceOntology created 1
_Deleted created 1
GeneticallyModifiedResidue created 1
ReferenceDNASequence created 1
FunctionalStatusType created 1
EntityCompartment created 1
ChemicalDrug created 1
FragmentDeletionModification created 1
GO_BiologicalProcess created 1
ReactionlikeEvent created 1
_AttributeValueBeforeChange created 1
PositiveRegulation created 1
FragmentInsertionModification created 1
ProteinDrug created 1
Vertex created 1
ControlledVocabulary created 1
Reaction created 1
PathwayVertex created 1
RNADrug created 1
CatalystActivity created 1
Requirement created 1
LiteratureReference created 1
_Release created 1
NegativeGeneExpressionRegulation created 1
Depolymerisation created 1
Book created 1
DefinedSet created 1
ReferenceRNASequence created 1
StableIdentifier created 1
Pathway created 1
Person created 1
Complex created 1
_InstanceBeforeChange created 1
Compartment created 1
URL created 1
IntraChainCrosslinkedResidue created 1
InterChainCrosslinkedResidue created 1
FragmentModification created 1
GO_MolecularFunction created 1
PhysicalEntity created 1
Polymerisation created 1
GroupModifiedResidue created 1
GO_CellularComponent created 1
ReferenceTherapeutic created 1
FragmentReplacedModification created 1
EntitySet created 1
ReferenceGroup created 1
ReferenceGeneProduct created 1
ReferenceIsoform created 1
DatabaseIdentifier created 1
AbstractModifiedResidue created 1
VertexSearchableTerm created 1
DatabaseObject created 1
PathwayDiagram created 1
Regulation created 1
Edge created 1
ModifiedResidue created 1
EvidenceType created 1
PathwayCoordinates created 1
ReferenceMolecule created 1
FailedReaction created 1
Polymer created 1
EntityWithAccessionedSequence created 1
Figure created 1
PositiveGeneExpressionRegulation created 1
CandidateSet created 1
TranslationalModification created 1
FunctionalStatus created 1
CellType created 1
Disease created 1
ReferenceDatabase created 1
ReferenceSequence created 1
BlackBoxEvent created 1
CrosslinkedResidue created 1
EntityVertex created 1
ReactionCoordinates created 1
Event created 1
Summation created 1
NegativeRegulation created 1
OtherEntity created 1
DeletedControlledVocabulary created 1
Affiliation created 1
Publication created 1
SimpleEntity created 1
ExternalOntology created 1
ReferenceEntity created 1
OpenSet created 1
FrontPage created 1
Taxon created 1
EntityFunctionalStatus created 1
ConcurrentEventSet created 1
InstanceEdit created 1
Drug created 1
ReplacedResidue created 1
Species created 1
_InstanceBeforeChange instanceEdit 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.