Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
_InstanceBeforeChange instanceEdit 1
Reaction reviewed +
Event reviewed +
EntityWithAccessionedSequence reviewed +
ReactionlikeEvent reviewed +
PositiveRegulation reviewed +
Polymer reviewed +
NegativeRegulation reviewed +
GenomeEncodedEntity reviewed +
DefinedSet reviewed +
Complex reviewed +
EntitySet reviewed +
PositiveGeneExpressionRegulation reviewed +
CandidateSet reviewed +
Pathway reviewed +
FailedReaction reviewed +
OtherEntity reviewed +
Requirement reviewed +
Regulation reviewed +
Depolymerisation reviewed +
NegativeGeneExpressionRegulation reviewed +
OpenSet reviewed +
PhysicalEntity reviewed +
Polymerisation reviewed +
SimpleEntity reviewed +
BlackBoxEvent reviewed +
ReactionlikeEvent revised +
Event revised +
Reaction revised +
EntityWithAccessionedSequence revised +
NegativeRegulation revised +
Polymer revised +
PositiveRegulation revised +
DefinedSet revised +
GenomeEncodedEntity revised +
Complex revised +
EntitySet revised +
PositiveGeneExpressionRegulation revised +
OtherEntity revised +
Requirement revised +
CandidateSet revised +
Pathway revised +
FailedReaction revised +
Regulation revised +
Depolymerisation revised +
OpenSet revised +
NegativeGeneExpressionRegulation revised +
SimpleEntity revised +
BlackBoxEvent revised +
PhysicalEntity revised +
Polymerisation revised +
FailedReaction created 1
Pathway created 1
Taxon created 1
FragmentDeletionModification created 1
CrosslinkedResidue created 1
PathwayVertex created 1
OpenSet created 1
LiteratureReference created 1
PhysicalEntity created 1
_AttributeValueBeforeChange created 1
SimpleEntity created 1
ReferenceGeneProduct created 1
EntityWithAccessionedSequence created 1
ReactionCoordinates created 1
ReactionlikeEvent created 1
Disease created 1
FragmentInsertionModification created 1
DatabaseIdentifier created 1
EvidenceType created 1
DefinedSet created 1
Book created 1
ExternalOntology created 1
Complex created 1
_Deleted created 1
CellType created 1
EntitySet created 1
TranslationalModification created 1
InterChainCrosslinkedResidue created 1
FragmentReplacedModification created 1
Depolymerisation created 1
CatalystActivity created 1
Edge created 1
_InstanceBeforeChange created 1
ReactionVertex created 1
ReferenceRNASequence created 1
FragmentModification created 1
EntityFunctionalStatus created 1
EntityCompartment created 1
Compartment created 1
Person created 1
URL created 1
ReferenceMolecule created 1
Vertex created 1
ReferenceDNASequence created 1
IntraChainCrosslinkedResidue created 1
GO_CellularComponent created 1
CandidateSet created 1
Requirement created 1
ConcurrentEventSet created 1
PathwayDiagram created 1
PathwayDiagramItem created 1
Publication created 1
FunctionalStatusType created 1
DeletedControlledVocabulary created 1
FrontPage created 1
Polymerisation created 1
Species created 1
Event created 1
Reaction created 1
StableIdentifier created 1
GeneticallyModifiedResidue created 1
EntityVertex created 1
Figure created 1
PositiveRegulation created 1
Polymer created 1
NegativeRegulation created 1
ReplacedResidue created 1
GO_BiologicalProcess created 1
InstanceEdit created 1
GenomeEncodedEntity created 1
DatabaseObject created 1
ReferenceGroup created 1
ReferenceEntity created 1
PositiveGeneExpressionRegulation created 1
VertexSearchableTerm created 1
OtherEntity created 1
Regulation created 1
Summation created 1
NegativeGeneExpressionRegulation created 1
ReferenceIsoform created 1
GO_MolecularFunction created 1
PsiMod created 1
PathwayCoordinates created 1
ControlledVocabulary created 1
BlackBoxEvent created 1
ReferenceDatabase created 1
FunctionalStatus created 1
Affiliation created 1
ReferenceSequence created 1
_Release created 1
ModifiedResidue created 1
GroupModifiedResidue created 1
AbstractModifiedResidue created 1
SequenceOntology created 1
NegativeGeneExpressionRegulation edited +
OpenSet edited +
PhysicalEntity edited +
Polymerisation edited +
SimpleEntity edited +
BlackBoxEvent edited +
CandidateSet edited +
FailedReaction edited +
Pathway edited +
OtherEntity edited +
Requirement edited +
Regulation edited +
Depolymerisation edited +
GenomeEncodedEntity edited +
DefinedSet edited +
Complex edited +
PositiveGeneExpressionRegulation edited +
EntitySet edited +
Event edited +
Reaction edited +
EntityWithAccessionedSequence edited +
ReactionlikeEvent edited +
PositiveRegulation edited +
NegativeRegulation edited +
Polymer edited +
SimpleEntity modified +
_AttributeValueBeforeChange modified +
PhysicalEntity modified +
OpenSet modified +
LiteratureReference modified +
PathwayVertex modified +
Taxon modified +
FragmentDeletionModification modified +
CrosslinkedResidue modified +
Pathway modified +
FailedReaction modified +
_Deleted modified +
CellType modified +
Complex modified +
InterChainCrosslinkedResidue modified +
TranslationalModification modified +
EntitySet modified +
Book modified +
ExternalOntology modified +
DatabaseIdentifier modified +
EvidenceType modified +
DefinedSet modified +
FragmentInsertionModification modified +
Disease modified +
ReactionCoordinates modified +
ReactionlikeEvent modified +
ReferenceGeneProduct modified +
EntityWithAccessionedSequence modified +
FragmentModification modified +
ReferenceRNASequence modified +
Edge modified +
_InstanceBeforeChange modified +
ReactionVertex modified +
Depolymerisation modified +
CatalystActivity modified +
FragmentReplacedModification modified +
Vertex modified +
ReferenceMolecule modified +
IntraChainCrosslinkedResidue modified +
ReferenceDNASequence modified +
URL modified +
Person modified +
Compartment modified +
EntityCompartment modified +
EntityFunctionalStatus modified +
Species modified +
Polymerisation modified +
FrontPage modified +
FunctionalStatusType modified +
DeletedControlledVocabulary modified +
Publication modified +
ConcurrentEventSet modified +
PathwayDiagram modified +
PathwayDiagramItem modified +
Requirement modified +
CandidateSet modified +
GO_CellularComponent modified +
ReferenceEntity modified +
PositiveGeneExpressionRegulation modified +
ReferenceGroup modified +
DatabaseObject modified +
GO_BiologicalProcess modified +
InstanceEdit modified +
GenomeEncodedEntity modified +
Polymer modified +
NegativeRegulation modified +
ReplacedResidue modified +
EntityVertex modified +
Figure modified +
PositiveRegulation modified +
StableIdentifier modified +
GeneticallyModifiedResidue modified +
Event modified +
Reaction modified +
BlackBoxEvent modified +
ControlledVocabulary modified +
PathwayCoordinates modified +
NegativeGeneExpressionRegulation modified +
ReferenceIsoform modified +
PsiMod modified +
GO_MolecularFunction modified +
Summation modified +
Regulation modified +
OtherEntity modified +
VertexSearchableTerm modified +
AbstractModifiedResidue modified +
SequenceOntology modified +
GroupModifiedResidue modified +
ModifiedResidue modified +
_Release modified +
ReferenceSequence modified +
Affiliation modified +
FunctionalStatus modified +
ReferenceDatabase modified +
OtherEntity authored 1
Requirement authored 1
CandidateSet authored 1
FailedReaction authored +
Pathway authored +
Regulation authored 1
Depolymerisation authored +
OpenSet authored 1
NegativeGeneExpressionRegulation authored 1
SimpleEntity authored 1
BlackBoxEvent authored +
PhysicalEntity authored 1
Polymerisation authored +
ReactionlikeEvent authored +
Reaction authored +
Event authored +
EntityWithAccessionedSequence authored 1
NegativeRegulation authored 1
Polymer authored 1
PositiveRegulation authored 1
DefinedSet authored 1
GenomeEncodedEntity authored 1
Complex authored 1
EntitySet authored 1
PositiveGeneExpressionRegulation authored 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.