Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
PathwayVertex modified +
Pathway modified +
Complex modified +
FragmentInsertionModification modified +
Publication modified +
_InstanceBeforeChange modified +
PathwayDiagram modified +
EntityFunctionalStatus modified +
PathwayDiagramItem modified +
GeneticallyModifiedResidue modified +
ReferenceIsoform modified +
FragmentModification modified +
FunctionalStatus modified +
GO_MolecularFunction modified +
Book modified +
_Release modified +
InstanceEdit modified +
PositiveRegulation modified +
CellType modified +
FragmentReplacedModification modified +
OpenSet modified +
ReactionCoordinates modified +
ReactionlikeEvent modified +
LiteratureReference modified +
ReferenceDatabase modified +
_AttributeValueBeforeChange modified +
Reaction modified +
NegativeRegulation modified +
ReplacedResidue modified +
FunctionalStatusType modified +
PathwayCoordinates modified +
SequenceOntology modified +
Regulation modified +
FragmentDeletionModification modified +
StableIdentifier modified +
ReferenceGroup modified +
RNADrug modified +
FailedReaction modified +
ReferenceMolecule modified +
DatabaseObject modified +
CandidateSet modified +
Polymerisation modified +
DeletedControlledVocabulary modified +
GO_BiologicalProcess modified +
ControlledVocabulary modified +
AbstractModifiedResidue modified +
PositiveGeneExpressionRegulation modified +
PhysicalEntity modified +
EntitySet modified +
SimpleEntity modified +
Requirement modified +
EntityCompartment modified +
IntraChainCrosslinkedResidue modified +
CatalystActivity modified +
EntityVertex modified +
EvidenceType modified +
ModifiedResidue modified +
Figure modified +
ReferenceTherapeutic modified +
ReactionVertex modified +
Vertex modified +
ReferenceSequence modified +
PsiMod modified +
GenomeEncodedEntity modified +
ConcurrentEventSet modified +
Disease modified +
ReferenceDNASequence modified +
Summation modified +
FrontPage modified +
EntityWithAccessionedSequence modified +
VertexSearchableTerm modified +
ProteinDrug modified +
DatabaseIdentifier modified +
URL modified +
CrosslinkedResidue modified +
Edge modified +
Affiliation modified +
GroupModifiedResidue modified +
InterChainCrosslinkedResidue modified +
Person modified +
Depolymerisation modified +
GO_CellularComponent modified +
BlackBoxEvent modified +
ChemicalDrug modified +
TranslationalModification modified +
ReferenceEntity modified +
Compartment modified +
NegativeGeneExpressionRegulation modified +
Polymer modified +
_Deleted modified +
Event modified +
Drug modified +
ReferenceRNASequence modified +
ExternalOntology modified +
DefinedSet modified +
OtherEntity modified +
Species modified +
Taxon modified +
ReferenceGeneProduct modified +
Pathway reviewed +
NegativeRegulation reviewed +
Complex reviewed +
Reaction reviewed +
SimpleEntity reviewed +
Requirement reviewed +
Regulation reviewed +
Depolymerisation reviewed +
ChemicalDrug reviewed +
BlackBoxEvent reviewed +
RNADrug reviewed +
FailedReaction reviewed +
NegativeGeneExpressionRegulation reviewed +
GenomeEncodedEntity reviewed +
Polymer reviewed +
CandidateSet reviewed +
Event reviewed +
Drug reviewed +
PositiveRegulation reviewed +
ProteinDrug reviewed +
EntityWithAccessionedSequence reviewed +
Polymerisation reviewed +
ReactionlikeEvent reviewed +
OpenSet reviewed +
OtherEntity reviewed +
PositiveGeneExpressionRegulation reviewed +
DefinedSet reviewed +
EntitySet reviewed +
PhysicalEntity reviewed +
_InstanceBeforeChange instanceEdit 1
_InstanceBeforeChange created 1
PathwayDiagram created 1
Pathway created 1
Complex created 1
FragmentInsertionModification created 1
PathwayVertex created 1
Publication created 1
GO_MolecularFunction created 1
GeneticallyModifiedResidue created 1
ReferenceIsoform created 1
PathwayDiagramItem created 1
EntityFunctionalStatus created 1
FunctionalStatus created 1
FragmentModification created 1
PositiveRegulation created 1
InstanceEdit created 1
Book created 1
_Release created 1
ReactionlikeEvent created 1
OpenSet created 1
ReactionCoordinates created 1
LiteratureReference created 1
FragmentReplacedModification created 1
CellType created 1
FragmentDeletionModification created 1
SequenceOntology created 1
PathwayCoordinates created 1
Regulation created 1
StableIdentifier created 1
_AttributeValueBeforeChange created 1
Reaction created 1
NegativeRegulation created 1
ReferenceDatabase created 1
FunctionalStatusType created 1
ReplacedResidue created 1
FailedReaction created 1
ReferenceMolecule created 1
ReferenceGroup created 1
RNADrug created 1
DatabaseObject created 1
CandidateSet created 1
PositiveGeneExpressionRegulation created 1
AbstractModifiedResidue created 1
EntitySet created 1
PhysicalEntity created 1
DeletedControlledVocabulary created 1
Polymerisation created 1
ControlledVocabulary created 1
GO_BiologicalProcess created 1
ReferenceTherapeutic created 1
Figure created 1
EntityCompartment created 1
IntraChainCrosslinkedResidue created 1
CatalystActivity created 1
SimpleEntity created 1
Requirement created 1
ModifiedResidue created 1
EvidenceType created 1
EntityVertex created 1
PsiMod created 1
GenomeEncodedEntity created 1
ReactionVertex created 1
ReferenceSequence created 1
Vertex created 1
Disease created 1
Summation created 1
ReferenceDNASequence created 1
ConcurrentEventSet created 1
ProteinDrug created 1
VertexSearchableTerm created 1
EntityWithAccessionedSequence created 1
FrontPage created 1
URL created 1
DatabaseIdentifier created 1
GroupModifiedResidue created 1
Person created 1
InterChainCrosslinkedResidue created 1
GO_CellularComponent created 1
Depolymerisation created 1
Affiliation created 1
Edge created 1
CrosslinkedResidue created 1
Compartment created 1
NegativeGeneExpressionRegulation created 1
Polymer created 1
TranslationalModification created 1
ChemicalDrug created 1
BlackBoxEvent created 1
ReferenceEntity created 1
Drug created 1
_Deleted created 1
Event created 1
Species created 1
OtherEntity created 1
ExternalOntology created 1
DefinedSet created 1
ReferenceGeneProduct created 1
Taxon created 1
ReferenceRNASequence created 1
SimpleEntity revised +
Requirement revised +
Reaction revised +
Pathway revised +
Complex revised +
NegativeRegulation revised +
Regulation revised +
Depolymerisation revised +
BlackBoxEvent revised +
ChemicalDrug revised +
RNADrug revised +
NegativeGeneExpressionRegulation revised +
FailedReaction revised +
Polymer revised +
GenomeEncodedEntity revised +
CandidateSet revised +
Event revised +
Drug revised +
PositiveRegulation revised +
Polymerisation revised +
EntityWithAccessionedSequence revised +
ProteinDrug revised +
OpenSet revised +
PositiveGeneExpressionRegulation revised +
ReactionlikeEvent revised +
DefinedSet revised +
OtherEntity revised +
PhysicalEntity revised +
EntitySet revised +
Polymerisation authored +
EntityWithAccessionedSequence authored 1
ProteinDrug authored 1
PhysicalEntity authored 1
EntitySet authored 1
PositiveGeneExpressionRegulation authored 1
OpenSet authored 1
ReactionlikeEvent authored +
OtherEntity authored 1
DefinedSet authored 1
Event authored +
CandidateSet authored 1
PositiveRegulation authored 1
Drug authored 1
RNADrug authored 1
BlackBoxEvent authored +
ChemicalDrug authored 1
Polymer authored 1
GenomeEncodedEntity authored 1
NegativeGeneExpressionRegulation authored 1
FailedReaction authored +
SimpleEntity authored 1
Requirement authored 1
Pathway authored +
Reaction authored +
Complex authored 1
NegativeRegulation authored 1
Depolymerisation authored +
Regulation authored 1
RNADrug edited +
ChemicalDrug edited +
BlackBoxEvent edited +
GenomeEncodedEntity edited +
Polymer edited +
FailedReaction edited +
NegativeGeneExpressionRegulation edited +
Pathway edited +
Complex edited +
NegativeRegulation edited +
Reaction edited +
SimpleEntity edited +
Requirement edited +
Depolymerisation edited +
Regulation edited +
EntityWithAccessionedSequence edited +
ProteinDrug edited +
Polymerisation edited +
EntitySet edited +
PhysicalEntity edited +
OpenSet edited +
ReactionlikeEvent edited +
DefinedSet edited +
PositiveGeneExpressionRegulation edited +
OtherEntity edited +
Event edited +
CandidateSet edited +
PositiveRegulation edited +
Drug edited +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.