Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
FailedReaction reviewed +
PhysicalEntity reviewed +
Pathway reviewed +
ProteinDrug reviewed +
OtherEntity reviewed +
PositiveRegulation reviewed +
Depolymerisation reviewed +
SimpleEntity reviewed +
Polymerisation reviewed +
BlackBoxEvent reviewed +
NegativeGeneExpressionRegulation reviewed +
OpenSet reviewed +
ChemicalDrug reviewed +
Polymer reviewed +
Regulation reviewed +
PositiveGeneExpressionRegulation reviewed +
Complex reviewed +
ReactionlikeEvent reviewed +
Requirement reviewed +
RNADrug reviewed +
Event reviewed +
NegativeRegulation reviewed +
Drug reviewed +
CandidateSet reviewed +
EntitySet reviewed +
EntityWithAccessionedSequence reviewed +
GenomeEncodedEntity reviewed +
DefinedSet reviewed +
Reaction reviewed +
SimpleEntity revised +
Polymerisation revised +
BlackBoxEvent revised +
ChemicalDrug revised +
Polymer revised +
NegativeGeneExpressionRegulation revised +
OpenSet revised +
OtherEntity revised +
ProteinDrug revised +
PositiveRegulation revised +
PhysicalEntity revised +
FailedReaction revised +
Pathway revised +
Depolymerisation revised +
EntityWithAccessionedSequence revised +
EntitySet revised +
Drug revised +
CandidateSet revised +
Reaction revised +
DefinedSet revised +
GenomeEncodedEntity revised +
Complex revised +
ReactionlikeEvent revised +
Requirement revised +
Regulation revised +
PositiveGeneExpressionRegulation revised +
NegativeRegulation revised +
RNADrug revised +
Event revised +
ReferenceDNASequence modified +
OpenSet modified +
LiteratureReference modified +
PathwayDiagramItem modified +
TranslationalModification modified +
Polymer modified +
ReplacedResidue modified +
Polymerisation modified +
PsiMod modified +
_Release modified +
NegativeRegulation modified +
PositiveGeneExpressionRegulation modified +
Requirement modified +
GenomeEncodedEntity modified +
DeletedControlledVocabulary modified +
URL modified +
ControlledVocabulary modified +
GroupModifiedResidue modified +
Disease modified +
FunctionalStatus modified +
Affiliation modified +
Depolymerisation modified +
GeneticallyModifiedResidue modified +
PositiveRegulation modified +
Edge modified +
NegativeGeneExpressionRegulation modified +
ReferenceSequence modified +
FragmentModification modified +
FragmentInsertionModification modified +
ReferenceTherapeutic modified +
ReactionVertex modified +
ReactionCoordinates modified +
SimpleEntity modified +
Taxon modified +
Event modified +
AbstractModifiedResidue modified +
DatabaseIdentifier modified +
_AttributeValueBeforeChange modified +
InterChainCrosslinkedResidue modified +
Regulation modified +
ReactionlikeEvent modified +
Figure modified +
EntityCompartment modified +
EntityFunctionalStatus modified +
ReferenceMolecule modified +
FragmentReplacedModification modified +
Drug modified +
GO_MolecularFunction modified +
InstanceEdit modified +
_InstanceBeforeChange modified +
FailedReaction modified +
PhysicalEntity modified +
OtherEntity modified +
ProteinDrug modified +
CrosslinkedResidue modified +
EvidenceType modified +
StableIdentifier modified +
ChemicalDrug modified +
ModifiedResidue modified +
ReferenceGroup modified +
SequenceOntology modified +
FragmentDeletionModification modified +
RNADrug modified +
ReferenceIsoform modified +
ConcurrentEventSet modified +
IntraChainCrosslinkedResidue modified +
EntityVertex modified +
Complex modified +
Species modified +
DefinedSet modified +
Reaction modified +
PathwayVertex modified +
ReferenceEntity modified +
FunctionalStatusType modified +
Vertex modified +
PathwayCoordinates modified +
EntitySet modified +
EntityWithAccessionedSequence modified +
DatabaseObject modified +
CatalystActivity modified +
Summation modified +
Pathway modified +
VertexSearchableTerm modified +
CellType modified +
FrontPage modified +
PathwayDiagram modified +
GO_CellularComponent modified +
ReferenceRNASequence modified +
Book modified +
BlackBoxEvent modified +
ReferenceDatabase modified +
ExternalOntology modified +
GO_BiologicalProcess modified +
ReferenceGeneProduct modified +
Person modified +
Publication modified +
_Deleted modified +
Compartment modified +
CandidateSet modified +
_InstanceBeforeChange instanceEdit 1
FrontPage created 1
BlackBoxEvent created 1
PathwayDiagram created 1
GO_CellularComponent created 1
ReferenceRNASequence created 1
Book created 1
Summation created 1
DatabaseObject created 1
CatalystActivity created 1
CellType created 1
Pathway created 1
VertexSearchableTerm created 1
Compartment created 1
ReferenceGeneProduct created 1
Person created 1
_Deleted created 1
Publication created 1
CandidateSet created 1
ExternalOntology created 1
GO_BiologicalProcess created 1
ReferenceDatabase created 1
EvidenceType created 1
StableIdentifier created 1
ChemicalDrug created 1
CrosslinkedResidue created 1
SequenceOntology created 1
ModifiedResidue created 1
ReferenceGroup created 1
InstanceEdit created 1
_InstanceBeforeChange created 1
OtherEntity created 1
ProteinDrug created 1
PhysicalEntity created 1
FailedReaction created 1
Reaction created 1
PathwayVertex created 1
DefinedSet created 1
ReferenceEntity created 1
Vertex created 1
FunctionalStatusType created 1
PathwayCoordinates created 1
EntityWithAccessionedSequence created 1
EntitySet created 1
ConcurrentEventSet created 1
RNADrug created 1
FragmentDeletionModification created 1
ReferenceIsoform created 1
Complex created 1
EntityVertex created 1
Species created 1
IntraChainCrosslinkedResidue created 1
Edge created 1
NegativeGeneExpressionRegulation created 1
ReferenceSequence created 1
ReactionVertex created 1
ReactionCoordinates created 1
SimpleEntity created 1
FragmentInsertionModification created 1
FragmentModification created 1
ReferenceTherapeutic created 1
GeneticallyModifiedResidue created 1
Affiliation created 1
Depolymerisation created 1
PositiveRegulation created 1
EntityFunctionalStatus created 1
EntityCompartment created 1
GO_MolecularFunction created 1
ReferenceMolecule created 1
FragmentReplacedModification created 1
Drug created 1
DatabaseIdentifier created 1
InterChainCrosslinkedResidue created 1
_AttributeValueBeforeChange created 1
Taxon created 1
Event created 1
AbstractModifiedResidue created 1
ReactionlikeEvent created 1
Figure created 1
Regulation created 1
TranslationalModification created 1
Polymer created 1
OpenSet created 1
PathwayDiagramItem created 1
LiteratureReference created 1
Polymerisation created 1
ReplacedResidue created 1
ReferenceDNASequence created 1
URL created 1
DeletedControlledVocabulary created 1
GenomeEncodedEntity created 1
ControlledVocabulary created 1
FunctionalStatus created 1
Disease created 1
GroupModifiedResidue created 1
NegativeRegulation created 1
PsiMod created 1
_Release created 1
Requirement created 1
PositiveGeneExpressionRegulation created 1
PositiveGeneExpressionRegulation authored 1
Regulation authored 1
Requirement authored 1
ReactionlikeEvent authored +
Complex authored 1
RNADrug authored 1
Event authored +
NegativeRegulation authored 1
CandidateSet authored 1
Drug authored 1
EntitySet authored 1
EntityWithAccessionedSequence authored 1
GenomeEncodedEntity authored 1
DefinedSet authored 1
Reaction authored +
Pathway authored +
FailedReaction authored +
PhysicalEntity authored 1
PositiveRegulation authored 1
ProteinDrug authored 1
OtherEntity authored 1
Depolymerisation authored +
Polymerisation authored +
BlackBoxEvent authored +
SimpleEntity authored 1
OpenSet authored 1
NegativeGeneExpressionRegulation authored 1
ChemicalDrug authored 1
Polymer authored 1
PositiveRegulation edited +
OtherEntity edited +
ProteinDrug edited +
PhysicalEntity edited +
FailedReaction edited +
Pathway edited +
Depolymerisation edited +
Polymerisation edited +
BlackBoxEvent edited +
SimpleEntity edited +
ChemicalDrug edited +
Polymer edited +
OpenSet edited +
NegativeGeneExpressionRegulation edited +
Requirement edited +
Complex edited +
ReactionlikeEvent edited +
PositiveGeneExpressionRegulation edited +
Regulation edited +
NegativeRegulation edited +
Event edited +
RNADrug edited +
EntityWithAccessionedSequence edited +
EntitySet edited +
CandidateSet edited +
Drug edited +
DefinedSet edited +
Reaction edited +
GenomeEncodedEntity edited +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.