Reactome: A Curated Pathway Database

Attributes of class 'EntitySet'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType 1 INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE EntityCompartment PhysicalEntity   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
hasMember + INSTANCE PhysicalEntity EntitySet   INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredProt 1 TEXT N/A EntitySet   TEXT
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
isOrdered 1 OTHER N/A EntitySet   ENUM('TRUE','FALSE')
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
maxHomologues 1 TEXT N/A EntitySet   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
relatedSpecies + INSTANCE Species EntitySet   INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species + INSTANCE Species EntitySet   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT
totalProt 1 TEXT N/A EntitySet   TEXT

Referers of class 'EntitySet' instances

Class name Attribute name Cardinality
Complex hasComponent +
_Deleted replacementInstances +
BlackBoxEvent entityOnOtherCell +
Depolymerisation entityOnOtherCell +
FailedReaction entityOnOtherCell +
Complex entityOnOtherCell +
Polymerisation entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
Reaction entityOnOtherCell +
CandidateSet hasCandidate +
BlackBoxEvent output +
Reaction output +
ReactionlikeEvent output +
Polymerisation output +
FailedReaction output +
Depolymerisation output +
FailedReaction requiredInputComponent +
Depolymerisation requiredInputComponent +
Polymerisation requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
Reaction requiredInputComponent +
BlackBoxEvent requiredInputComponent +
CatalystActivity physicalEntity 1
EntityFunctionalStatus physicalEntity 1
ConcurrentEventSet focusEntity +
EntitySet hasMember +
DefinedSet hasMember +
CandidateSet hasMember +
OpenSet hasMember +
NegativeGeneExpressionRegulation activeUnit +
Regulation activeUnit +
PositiveRegulation activeUnit +
NegativeRegulation activeUnit +
Requirement activeUnit +
CatalystActivity activeUnit +
PositiveGeneExpressionRegulation activeUnit +
Requirement regulator 1
PositiveRegulation regulator 1
NegativeRegulation regulator 1
PositiveGeneExpressionRegulation regulator 1
NegativeGeneExpressionRegulation regulator 1
Regulation regulator 1
EntityVertex representedInstance 1
Polymerisation input +
FailedReaction input +
Depolymerisation input +
Reaction input +
ReactionlikeEvent input +
BlackBoxEvent input +
GroupModifiedResidue modification 1
IntraChainCrosslinkedResidue modification 1
InterChainCrosslinkedResidue modification 1
CrosslinkedResidue modification 1
VertexSearchableTerm termProvider +
Polymer repeatedUnit +
DefinedSet inferredTo +
Complex inferredTo +
EntityWithAccessionedSequence inferredTo +
OtherEntity inferredTo +
OpenSet inferredTo +
RNADrug inferredTo +
GenomeEncodedEntity inferredTo +
SimpleEntity inferredTo +
ProteinDrug inferredTo +
EntitySet inferredTo +
Polymer inferredTo +
ChemicalDrug inferredTo +
CandidateSet inferredTo +
Drug inferredTo +
PhysicalEntity inferredTo +
CandidateSet inferredFrom +
ChemicalDrug inferredFrom +
Polymer inferredFrom +
PhysicalEntity inferredFrom +
Drug inferredFrom +
RNADrug inferredFrom +
ProteinDrug inferredFrom +
EntitySet inferredFrom +
SimpleEntity inferredFrom +
GenomeEncodedEntity inferredFrom +
EntityWithAccessionedSequence inferredFrom +
Complex inferredFrom +
DefinedSet inferredFrom +
OtherEntity inferredFrom +
OpenSet inferredFrom +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.