Reactome: A Curated Pathway Database

Gramene Webinar: Plant Reactome updates (February 16, 2016)

Posted on February 12th, 2016, by Pankaj Jaiswal, under Community News, Conference and Meeting, Training, Webinar

Welcome to February 16, 2016 Gramene Database Webinar!

Plant Reactome ( is a freely available resource of curated metabolic, signaling, and regulatory pathways from the reference species rice, and gene homology-based pathway projections for 58 other plant species including Arabidopsis, maize, grape, strawberry, tomato, etc. Plant Reactome uses a eukaryotic cell model for pathway visualization and allows uploading and analysis of omics data. Plant Reactome is the Pathway module of the NSF-funded international collaborative project called the Gramene database (

Dr. Sushma Naithani, an Assistant Professor Research at Oregon State University, will show how users can navigate the Plant Reactome database, compare pathways across two or more species, and conduct an analysis of expression data. Using transcriptomic data from grape (Vitis vinifera), she will show how to upload and visualize expression data on pathway diagrams, and extract relevant information/statistics.

Join us online on Tuesday, February 16, 2016, at 2:00 pm EST/11:00 am PST.

Please register for the webinar

Join the Gramene/Plant Reactome Team at PAG 2014

Posted on January 3rd, 2014, by robinhaw, under Conference and Meeting, Reactome Announcement, Reactome Event
The Gramene/Plant Reactome team will be presenting¬†a workshop at the Plant and Animal Genomes (PAG 2014) Conference!¬†Learn the latest updates to Gramene’s comparative genomics and pathways visualization/mining tools to aid your research of plant models and crops.
Workshops will give a broad overview of Gramene’s database resources and demonstrate many specific topics like how to:
  • Explore plant reference genomes with value-added functional annotation, population data, and phylogenomic comparisons
  • Navigate metabolic and regulatory pathways with the new Plant Reactome
  • Analysis of gene expression datasets on Plant Reactome
  • Visualize your data on Gramene’s genome and pathway browsers
  • Mine mutant genes from our extensive germplasm genotype database
  • Download images, sequences, orthologs, gene-trees, and many other data in a variety of conventional formats
  • Give feedback and get help!
Meet with Gramene staff and developers to explore what Gramene can do for you.
Also please VISIT OUR BOOTH for one-on-one assistance or just to say Hi!